Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV19_RS01345 Genome accession   NZ_AP025463
Coordinates   300712..301344 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio celticus strain CECT 7224     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 295712..306344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS01330 astA 297006..298025 (+) 1020 WP_065676541.1 arginine N-succinyltransferase -
  OCV19_RS01335 astD 298065..299522 (+) 1458 WP_017066203.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV19_RS01340 - 299736..300527 (+) 792 WP_065676540.1 DUF1338 domain-containing protein -
  OCV19_RS01345 crp 300712..301344 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV19_RS01350 - 301584..302453 (-) 870 WP_010435210.1 phosphoribulokinase -
  OCV19_RS01355 - 302531..302743 (-) 213 WP_010435208.1 YheU family protein -
  OCV19_RS01360 - 302839..303831 (-) 993 WP_019825349.1 hydrolase -
  OCV19_RS01365 - 304039..304509 (-) 471 WP_065676539.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=91685 OCV19_RS01345 WP_004729651.1 300712..301344(-) (crp) [Vibrio celticus strain CECT 7224]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91685 OCV19_RS01345 WP_004729651.1 300712..301344(-) (crp) [Vibrio celticus strain CECT 7224]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGATGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment