Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   U7118_RS03040 Genome accession   NZ_CP141283
Coordinates   577114..577836 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain DKU_09     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 572114..582836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS03015 (U7118_03015) degS 572424..573581 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  U7118_RS03020 (U7118_03020) degU 573664..574353 (+) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  U7118_RS03025 (U7118_03025) fakBA 574451..575296 (+) 846 WP_014481053.1 DegV family protein -
  U7118_RS03030 (U7118_03030) comFA 575403..576794 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  U7118_RS03035 (U7118_03035) comFB 576854..577150 (+) 297 WP_003227989.1 late competence protein ComFB -
  U7118_RS03040 (U7118_03040) comFC 577114..577836 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  U7118_RS03045 (U7118_03045) yvyF 577909..578328 (+) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  U7118_RS03050 (U7118_03050) flgM 578409..578675 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  U7118_RS03055 (U7118_03055) flgN 578691..579173 (+) 483 WP_014481048.1 flagellar protein FlgN -
  U7118_RS03060 (U7118_03060) flgK 579192..580715 (+) 1524 WP_324271437.1 flagellar hook-associated protein FlgK -
  U7118_RS03065 (U7118_03065) flgL 580726..581622 (+) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  U7118_RS03070 (U7118_03070) yviE 581669..582244 (+) 576 WP_014481045.1 DUF6470 family protein -
  U7118_RS03075 (U7118_03075) fliW 582265..582696 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=916797 U7118_RS03040 WP_014481051.1 577114..577836(+) (comFC) [Bacillus subtilis strain DKU_09]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=916797 U7118_RS03040 WP_014481051.1 577114..577836(+) (comFC) [Bacillus subtilis strain DKU_09]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992