Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   U7118_RS01980 Genome accession   NZ_CP141283
Coordinates   381737..381856 (-) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain DKU_09     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 376737..386856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U7118_RS01960 (U7118_01960) pbpG 377107..379182 (-) 2076 WP_103330045.1 transglycosylase domain-containing protein -
  U7118_RS01965 (U7118_01965) speE 379384..380214 (+) 831 WP_003227543.1 spermidine synthase -
  U7118_RS01970 (U7118_01970) speB 380275..381147 (+) 873 WP_003227545.1 agmatinase -
  U7118_RS01975 (U7118_01975) - 381212..381639 (-) 428 Protein_392 YbaK/EbsC family protein -
  U7118_RS01980 (U7118_01980) phrF 381737..381856 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  U7118_RS01985 (U7118_01985) rapF 381840..382985 (-) 1146 WP_069837832.1 response regulator aspartate phosphatase RapF Regulator
  U7118_RS01990 (U7118_01990) - 382988..383218 (+) 231 Protein_395 hypothetical protein -
  U7118_RS01995 (U7118_01995) ywhK 383215..384566 (+) 1352 Protein_396 YncE family protein -
  U7118_RS02000 (U7118_02000) ywhL 384605..385981 (+) 1377 WP_324271429.1 YncE family protein -
  U7118_RS02005 (U7118_02005) albG 385987..386688 (-) 702 WP_046160959.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=916789 U7118_RS01980 WP_009968329.1 381737..381856(-) (phrF) [Bacillus subtilis strain DKU_09]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=916789 U7118_RS01980 WP_009968329.1 381737..381856(-) (phrF) [Bacillus subtilis strain DKU_09]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487