Detailed information NTG0916737

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: ABZS46_RS11245
• Genome accession: NZ_CP160098
• Coordinates: 2334054..2334656 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271551.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain C_01_sau
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2329054..2339656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZS46_RS11225 (ABZS46_11220)	yajC	2330550..2330810 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
ABZS46_RS11230 (ABZS46_11225)	tgt	2330829..2331968 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
ABZS46_RS11235 (ABZS46_11230)	queA	2331991..2333016 (-)	1026	WP_001008435.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
ABZS46_RS11240 (ABZS46_11235)	ruvB	2333018..2334022 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ABZS46_RS11245 (ABZS46_11240)	ruvA	2334054..2334656 (-)	603	WP_000271551.1	Holliday junction branch migration protein RuvA	Machinery gene
ABZS46_RS11250 (ABZS46_11245)	-	2334670..2335125 (-)	456	WP_000368899.1	ACT domain-containing protein	-
ABZS46_RS11255 (ABZS46_11250)	obgE	2335138..2336430 (-)	1293	WP_000496100.1	GTPase ObgE	-
ABZS46_RS11260 (ABZS46_11255)	rpmA	2336650..2336934 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
ABZS46_RS11265 (ABZS46_11260)	-	2336946..2337266 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ABZS46_RS11270 (ABZS46_11265)	rplU	2337272..2337580 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
ABZS46_RS11275 (ABZS46_11270)	mreD	2337816..2338346 (-)	531	WP_412521730.1	rod shape-determining protein MreD	-
ABZS46_RS11280 (ABZS46_11275)	mreC	2338346..2339188 (-)	843	WP_000911038.1	rod shape-determining protein MreC	-
ABZS46_RS11285 (ABZS46_11280)	-	2339388..2339507 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22253.45 Da
• Isoelectric Point: 5.7132

>NTDB_id=916737 ABZS46_RS11245 WP_000271551.1 2334054..2334656(-) (ruvA) [Staphylococcus aureus strain C_01_sau]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKQLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=916737 ABZS46_RS11245 WP_000271551.1 2334054..2334656(-) (ruvA) [Staphylococcus aureus strain C_01_sau]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCAACTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (156-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.734	99.5	0.465
ruvA	Streptococcus pneumoniae R6	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae D39	46.231	99.5	0.46
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425