Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   U2H22_RS08580 Genome accession   NZ_CP141265
Coordinates   1660903..1661802 (+) Length   299 a.a.
NCBI ID   WP_025284725.1    Uniprot ID   -
Organism   Bacillus velezensis strain L2D39     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1655903..1666802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H22_RS08560 (U2H22_08560) - 1656593..1658296 (+) 1704 WP_025284723.1 hypothetical protein -
  U2H22_RS08565 (U2H22_08565) - 1658293..1658574 (+) 282 WP_015239847.1 FlhB-like flagellar biosynthesis protein -
  U2H22_RS08570 (U2H22_08570) sucC 1658749..1659906 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  U2H22_RS08575 (U2H22_08575) sucD 1659935..1660837 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  U2H22_RS08580 (U2H22_08580) dprA 1660903..1661802 (+) 900 WP_025284725.1 DNA-processing protein DprA Machinery gene
  U2H22_RS08585 (U2H22_08585) topA 1661984..1664059 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  U2H22_RS08590 (U2H22_08590) trmFO 1664124..1665431 (+) 1308 WP_218791630.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  U2H22_RS08595 (U2H22_08595) xerC 1665501..1666418 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32874.02 Da        Isoelectric Point: 8.1570

>NTDB_id=916657 U2H22_RS08580 WP_025284725.1 1660903..1661802(+) (dprA) [Bacillus velezensis strain L2D39]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPNPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTPRCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=916657 U2H22_RS08580 WP_025284725.1 1660903..1661802(+) (dprA) [Bacillus velezensis strain L2D39]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTACCGAATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATTGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCCCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.903

100

0.709
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368