Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV30_RS14120 Genome accession   NZ_AP025460
Coordinates   3119849..3120481 (+) Length   210 a.a.
NCBI ID   WP_017036097.1    Uniprot ID   A0A7Y4ALD5
Organism   Vibrio atlanticus strain CECT 7223     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114849..3125481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS14100 - 3116613..3117083 (+) 471 WP_009848923.1 TIGR02444 family protein -
  OCV30_RS14105 - 3117360..3118352 (+) 993 WP_065679720.1 hydrolase -
  OCV30_RS14110 - 3118448..3118660 (+) 213 WP_010435208.1 YheU family protein -
  OCV30_RS14115 - 3118738..3119607 (+) 870 WP_012604929.1 phosphoribulokinase -
  OCV30_RS14120 crp 3119849..3120481 (+) 633 WP_017036097.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV30_RS14125 - 3120666..3121457 (-) 792 WP_065679721.1 DUF1338 domain-containing protein -
  OCV30_RS14130 astD 3121716..3123173 (-) 1458 WP_012604932.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV30_RS14135 astA 3123213..3124232 (-) 1020 WP_029223029.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.39 Da        Isoelectric Point: 7.4009

>NTDB_id=91660 OCV30_RS14120 WP_017036097.1 3119849..3120481(+) (crp) [Vibrio atlanticus strain CECT 7223]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91660 OCV30_RS14120 WP_017036097.1 3119849..3120481(+) (crp) [Vibrio atlanticus strain CECT 7223]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATTGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTGGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATTCTAATGCGTCTTTCATCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCAAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATTGTTGGTTGTTCTCGTGAGACCGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y4ALD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment