Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   U6I89_RS19610 Genome accession   NZ_CP141263
Coordinates   3859152..3859271 (+) Length   39 a.a.
NCBI ID   WP_003222023.1    Uniprot ID   A0A9Q4EZF5
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3854152..3864271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS19590 (U6I89_19590) - 3854308..3855009 (+) 702 WP_060399738.1 hypothetical protein -
  U6I89_RS19595 (U6I89_19595) - 3855016..3856392 (-) 1377 WP_060399739.1 YncE family protein -
  U6I89_RS19600 (U6I89_19600) - 3856432..3857793 (-) 1362 WP_060399740.1 YncE family protein -
  U6I89_RS19605 (U6I89_19605) rapF 3858023..3859168 (+) 1146 WP_003235896.1 response regulator aspartate phosphatase RapF Regulator
  U6I89_RS19610 (U6I89_19610) phrF 3859152..3859271 (+) 120 WP_003222023.1 phosphatase RapF inhibitor PhrF Regulator
  U6I89_RS19615 (U6I89_19615) - 3859370..3859832 (+) 463 Protein_3811 YbaK/EbsC family protein -
  U6I89_RS19620 (U6I89_19620) speB 3859865..3860737 (-) 873 WP_060399742.1 agmatinase -
  U6I89_RS19625 (U6I89_19625) speE 3860798..3861628 (-) 831 WP_003235914.1 spermidine synthase -
  U6I89_RS19630 (U6I89_19630) - 3861830..3863905 (+) 2076 WP_060399743.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4226.12 Da        Isoelectric Point: 10.4997

>NTDB_id=916589 U6I89_RS19610 WP_003222023.1 3859152..3859271(+) (phrF) [Bacillus inaquosorum strain BIM B-2002]
MKLKSKLLLSCLALSTVFIATNIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=916589 U6I89_RS19610 WP_003222023.1 3859152..3859271(+) (phrF) [Bacillus inaquosorum strain BIM B-2002]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCCCTAAGCACTGTTTTCATCGCAACGAATATTGCAAACGCACC
TACACACCAAATTGAAGTTGCACAGCGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

92.593

69.231

0.641
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487