Detailed information NTG0916588

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: U6I89_RS19605
• Genome accession: NZ_CP141263
• Coordinates: 3858023..3859168 (+)
• Length: 381 a.a.
• NCBI ID: WP_003235896.1
• Uniprot ID: A0A9W5LLN8
• Organism: Bacillus inaquosorum strain BIM B-2002
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3853023..3864168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6I89_RS19585 (U6I89_19585)	-	3853031..3854311 (+)	1281	WP_060399737.1	M16 family metallopeptidase	-
U6I89_RS19590 (U6I89_19590)	-	3854308..3855009 (+)	702	WP_060399738.1	hypothetical protein	-
U6I89_RS19595 (U6I89_19595)	-	3855016..3856392 (-)	1377	WP_060399739.1	YncE family protein	-
U6I89_RS19600 (U6I89_19600)	-	3856432..3857793 (-)	1362	WP_060399740.1	YncE family protein	-
U6I89_RS19605 (U6I89_19605)	rapF	3858023..3859168 (+)	1146	WP_003235896.1	response regulator aspartate phosphatase RapF	Regulator
U6I89_RS19610 (U6I89_19610)	phrF	3859152..3859271 (+)	120	WP_003222023.1	phosphatase RapF inhibitor PhrF	Regulator
U6I89_RS19615 (U6I89_19615)	-	3859370..3859832 (+)	463	Protein_3811	YbaK/EbsC family protein	-
U6I89_RS19620 (U6I89_19620)	speB	3859865..3860737 (-)	873	WP_060399742.1	agmatinase	-
U6I89_RS19625 (U6I89_19625)	speE	3860798..3861628 (-)	831	WP_003235914.1	spermidine synthase	-
U6I89_RS19630 (U6I89_19630)	-	3861830..3863905 (+)	2076	WP_060399743.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.00 Da
• Isoelectric Point: 5.1475

>NTDB_id=916588 U6I89_RS19605 WP_003235896.1 3858023..3859168(+) (rapF) [Bacillus inaquosorum strain BIM B-2002]
MTGVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGVLDYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFKKAYSMAEAENQPQLMGRTLYNIGLCKNSQSQYED
AVTYFKRAIAVFEESNIIPSLPQAYFLITQIHYKMGKMDKAHAYHSKGMAYSQKAGDSIYLSEFEFLKSLYLSGPDEEAI
QSFFDFLESKMLYADLEDFALDVAKYYHERENFQKASAYFLKVEQVRQLIQGGVRLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=916588 U6I89_RS19605 WP_003235896.1 3858023..3859168(+) (rapF) [Bacillus inaquosorum strain BIM B-2002]
GTGACAGGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
TGATGCAGAATATTTGCGAAGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAATTCCGGCACAACCTGATGCTTGAGTACCTTGAACCGCTAGAAAAAATGCGGATCGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGAGTCCTTGATTATTACTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTTAAAAAGGCCGAAAGCAAGTTGATATTCG
TTAAGGATCGAATAGAGAAGGCAGAGTTTTTCTTTAAAATGTCTGAGTCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAGGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTTCAGTGTCACTCTTT
ATTTGCTACCAATTTCTTAGATCTGAAACAATATGAGGATGCCATATCACATTTTAAAAAAGCTTACTCTATGGCGGAAG
CTGAGAATCAGCCCCAATTAATGGGAAGAACATTGTACAACATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCGTAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCTAATATTATACCTTCCCTGCCCCAAGCCTATTTTTT
AATTACACAAATTCATTATAAAATGGGAAAAATGGATAAAGCCCATGCATATCATAGTAAGGGAATGGCTTATTCTCAAA
AGGCCGGAGATTCAATATATTTATCGGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCTGATGAAGAAGCAATT
CAAAGTTTCTTTGATTTCCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTCTTGATGTGGCAAAATATTA
TCATGAACGTGAAAATTTTCAAAAAGCTTCTGCTTATTTCCTAAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGATTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-207)

• Tetratricopeptide repeat (TPR_12) (223-290)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	95.801	100	0.958
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572