Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   U6I89_RS12630 Genome accession   NZ_CP141263
Coordinates   2526581..2526916 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus inaquosorum strain BIM B-2002     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2521581..2531916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6I89_RS12610 (U6I89_12610) gcvT 2522169..2523257 (-) 1089 WP_060399011.1 glycine cleavage system aminomethyltransferase GcvT -
  U6I89_RS12615 (U6I89_12615) - 2523701..2525374 (+) 1674 WP_060399012.1 DEAD/DEAH box helicase -
  U6I89_RS12620 (U6I89_12620) - 2525395..2526189 (+) 795 WP_003236936.1 YqhG family protein -
  U6I89_RS12625 (U6I89_12625) sinI 2526374..2526547 (+) 174 WP_003226347.1 anti-repressor SinI Regulator
  U6I89_RS12630 (U6I89_12630) sinR 2526581..2526916 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  U6I89_RS12635 (U6I89_12635) tasA 2527011..2527796 (-) 786 WP_003236939.1 biofilm matrix protein TasA -
  U6I89_RS12640 (U6I89_12640) sipW 2527860..2528432 (-) 573 WP_080429111.1 signal peptidase I SipW -
  U6I89_RS12645 (U6I89_12645) tapA 2528416..2529180 (-) 765 WP_060399014.1 amyloid fiber anchoring/assembly protein TapA -
  U6I89_RS12650 (U6I89_12650) - 2529453..2529779 (+) 327 WP_029316858.1 YqzG/YhdC family protein -
  U6I89_RS12655 (U6I89_12655) - 2529821..2530000 (-) 180 WP_003236949.1 YqzE family protein -
  U6I89_RS12660 (U6I89_12660) comGG 2530071..2530445 (-) 375 WP_060399015.1 competence type IV pilus minor pilin ComGG Machinery gene
  U6I89_RS12665 (U6I89_12665) comGF 2530446..2530829 (-) 384 WP_060399016.1 competence type IV pilus minor pilin ComGF Machinery gene
  U6I89_RS12670 (U6I89_12670) comGE 2530855..2531199 (-) 345 WP_060399017.1 competence type IV pilus minor pilin ComGE Machinery gene
  U6I89_RS12675 (U6I89_12675) comGD 2531183..2531614 (-) 432 WP_060399018.1 competence type IV pilus minor pilin ComGD Machinery gene
  U6I89_RS12680 (U6I89_12680) comGC 2531604..2531900 (-) 297 WP_003236957.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=916555 U6I89_RS12630 WP_003226345.1 2526581..2526916(+) (sinR) [Bacillus inaquosorum strain BIM B-2002]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=916555 U6I89_RS12630 WP_003226345.1 2526581..2526916(+) (sinR) [Bacillus inaquosorum strain BIM B-2002]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1