Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   U5817_RS20340 Genome accession   NZ_CP141259
Coordinates   4335845..4336696 (+) Length   283 a.a.
NCBI ID   WP_407278590.1    Uniprot ID   -
Organism   Aromatoleum evansii strain MAY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4330845..4341696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5817_RS20325 (U5817_20265) - 4331892..4332719 (+) 828 WP_407278587.1 inner membrane protein YpjD -
  U5817_RS20330 (U5817_20270) pilB 4332823..4334538 (+) 1716 WP_407278588.1 type IV-A pilus assembly ATPase PilB Machinery gene
  U5817_RS20335 (U5817_20275) pilC 4334555..4335790 (+) 1236 WP_407278589.1 type II secretion system F family protein Machinery gene
  U5817_RS20340 (U5817_20280) pilD 4335845..4336696 (+) 852 WP_407278590.1 prepilin peptidase Machinery gene
  U5817_RS20345 (U5817_20285) - 4336821..4337084 (+) 264 WP_169125945.1 FmdB family zinc ribbon protein -
  U5817_RS20350 (U5817_20290) - 4337100..4337726 (+) 627 WP_169125946.1 DUF502 domain-containing protein -
  U5817_RS20355 (U5817_20295) aspS 4337772..4339571 (+) 1800 WP_407278592.1 aspartate--tRNA ligase -
  U5817_RS20360 (U5817_20300) - 4339750..4341372 (+) 1623 WP_407278593.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 31012.58 Da        Isoelectric Point: 7.7840

>NTDB_id=916478 U5817_RS20340 WP_407278590.1 4335845..4336696(+) (pilD) [Aromatoleum evansii strain MAY27]
MPDFLRDPIVFTFLATLLGLFVGSFLNVVIHRLPQMMEREWHAQAAELRNEPPPQQETFNLATPRSRCPHCGHLITALEN
IPVVSYLMLRGRCRHCSAPISRRYPVVEMLTAVLSGYAAWHFGFGLASLGALVFVWTMIALAFIDLDTQLLPDSLTLPLL
WLGLALNLGGTYADISTSVIGAMAGYLALWSVYWLFRLATGKEGMGYGDFKLLAAIGAWLGWQMLPLTILFSSLVGAAVG
ISLIVFARHGRNVPIPFGPYLAAAGVLAMFWGQSLTSAYLGNL

Nucleotide


Download         Length: 852 bp        

>NTDB_id=916478 U5817_RS20340 WP_407278590.1 4335845..4336696(+) (pilD) [Aromatoleum evansii strain MAY27]
ATGCCAGACTTCCTTCGCGACCCGATCGTCTTCACTTTCCTTGCCACGCTCCTCGGCCTTTTCGTCGGCAGCTTCCTGAA
CGTCGTGATCCATCGCCTGCCACAGATGATGGAGCGCGAATGGCACGCGCAGGCGGCGGAACTGCGCAATGAACCGCCTC
CCCAACAGGAAACCTTCAACCTCGCCACCCCGCGCTCGCGCTGCCCGCATTGCGGGCACCTGATCACCGCGCTGGAGAAC
ATCCCGGTTGTCAGCTACCTGATGCTGCGCGGGCGCTGCCGCCATTGCAGCGCCCCCATCAGCCGCCGCTACCCCGTGGT
CGAGATGCTGACGGCCGTCCTGTCGGGTTACGCGGCCTGGCACTTCGGCTTCGGCCTCGCCAGCCTCGGCGCCCTCGTCT
TCGTGTGGACGATGATCGCCCTGGCCTTCATCGACCTCGACACCCAGCTTCTGCCCGACAGCCTGACGCTGCCCCTGCTG
TGGCTGGGACTCGCGCTCAACCTCGGCGGGACCTACGCGGACATTTCCACCAGCGTGATCGGTGCGATGGCCGGCTACCT
GGCGCTGTGGTCCGTGTATTGGCTGTTCAGGCTGGCAACCGGCAAGGAAGGCATGGGTTATGGCGATTTCAAGCTGCTCG
CCGCCATCGGGGCCTGGCTGGGATGGCAGATGCTGCCGCTCACGATCCTGTTCTCGTCGCTGGTCGGCGCGGCGGTCGGC
ATCAGCCTGATCGTCTTTGCGCGACACGGCCGCAACGTCCCCATCCCCTTCGGCCCCTATCTTGCTGCGGCCGGCGTGCT
GGCGATGTTCTGGGGGCAGAGCCTGACGAGCGCCTACCTCGGCAACCTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)

Type IV leader peptidase family (Peptidase_A24)

(132-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.634

100

0.558
  pilD Vibrio campbellii strain DS40M4

53.472

100

0.544
  pilD Acinetobacter baumannii D1279779

48.214

98.94

0.477
  pilD Acinetobacter nosocomialis M2

47.857

98.94

0.473
  pilD Neisseria gonorrhoeae MS11

51.181

89.753

0.459