Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U2H13_RS15210 Genome accession   NZ_CP141181
Coordinates   3085987..3086631 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus sp. A1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3080987..3091631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS15175 (U2H13_15140) - 3082172..3082603 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  U2H13_RS15180 (U2H13_15145) - 3082603..3082944 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  U2H13_RS15185 (U2H13_15150) - 3082937..3084418 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  U2H13_RS15190 (U2H13_15155) - 3084424..3084900 (+) 477 WP_154817911.1 Na+/H+ antiporter subunit E -
  U2H13_RS15195 (U2H13_15160) - 3084900..3085184 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  U2H13_RS15200 (U2H13_15165) mnhG 3085168..3085542 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  U2H13_RS15205 (U2H13_15170) - 3085582..3085965 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  U2H13_RS15210 (U2H13_15175) comA 3085987..3086631 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  U2H13_RS15215 (U2H13_15180) comP 3086712..3089015 (-) 2304 WP_021495364.1 histidine kinase Regulator
  U2H13_RS15220 (U2H13_15190) comQ 3089141..3090100 (-) 960 WP_233662477.1 class 1 isoprenoid biosynthesis enzyme Regulator
  U2H13_RS15225 (U2H13_15195) degQ 3090285..3090425 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  U2H13_RS15230 (U2H13_15200) - 3090891..3091232 (+) 342 WP_007613435.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=916270 U2H13_RS15210 WP_014418762.1 3085987..3086631(-) (comA) [Bacillus sp. A1]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=916270 U2H13_RS15210 WP_014418762.1 3085987..3086631(-) (comA) [Bacillus sp. A1]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86