Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU36_RS12465 Genome accession   NZ_AP025458
Coordinates   2739179..2739811 (+) Length   210 a.a.
NCBI ID   WP_017036097.1    Uniprot ID   A0A7Y4ALD5
Organism   Vibrio artabrorum strain CECT 7226     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2734179..2744811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS12445 - 2735979..2736449 (+) 471 WP_261838245.1 TIGR02444 family protein -
  OCU36_RS12450 - 2736692..2737684 (+) 993 WP_261838246.1 hydrolase -
  OCU36_RS12455 - 2737780..2737992 (+) 213 WP_261838247.1 YheU family protein -
  OCU36_RS12460 - 2738070..2738939 (+) 870 WP_261838248.1 phosphoribulokinase -
  OCU36_RS12465 crp 2739179..2739811 (+) 633 WP_017036097.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU36_RS12470 - 2740022..2740813 (-) 792 WP_261838249.1 DUF1338 domain-containing protein -
  OCU36_RS12475 astD 2740937..2742394 (-) 1458 WP_261838250.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU36_RS12480 astA 2742434..2743453 (-) 1020 WP_261838251.1 arginine N-succinyltransferase -
  OCU36_RS12485 - 2743559..2744770 (-) 1212 WP_261838252.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.39 Da        Isoelectric Point: 7.4009

>NTDB_id=91615 OCU36_RS12465 WP_017036097.1 2739179..2739811(+) (crp) [Vibrio artabrorum strain CECT 7226]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91615 OCU36_RS12465 WP_017036097.1 2739179..2739811(+) (crp) [Vibrio artabrorum strain CECT 7226]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTATTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACTTAAACCAAGGTGACTTCATTGGTGAGCTTGGCCTCTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAATTCCGCCAACTTAT
CCAAGTGAACCCAGACATCCTGATGCGCCTTTCATCGCAAATGGCAAACCGTTTACAAGTAACGAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGATGTAACAGGTCGTATCGCTCAAACGCTACTAAATCTAGCGAAACAGCCCGATGCCATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTCTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y4ALD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment