Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ABXU54_RS27770 Genome accession   NZ_CP159887
Coordinates   5980631..5982706 (+) Length   691 a.a.
NCBI ID   WP_003096624.1    Uniprot ID   A0A0H2ZJ60
Organism   Pseudomonas aeruginosa strain P113     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5975631..5987706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXU54_RS27740 - 5976053..5976433 (+) 381 WP_003096609.1 RidA family protein -
  ABXU54_RS27745 - 5976488..5977219 (+) 732 WP_003096611.1 hypothetical protein -
  ABXU54_RS27750 - 5977226..5977846 (-) 621 WP_003096613.1 LysE family translocator -
  ABXU54_RS27755 - 5977913..5978713 (-) 801 WP_003114367.1 AraC family transcriptional regulator -
  ABXU54_RS27760 - 5978713..5979564 (-) 852 WP_003117165.1 SDR family oxidoreductase -
  ABXU54_RS27765 oxyR 5979702..5980634 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  ABXU54_RS27770 recG 5980631..5982706 (+) 2076 WP_003096624.1 ATP-dependent DNA helicase RecG Machinery gene
  ABXU54_RS27775 - 5982796..5984205 (+) 1410 WP_003098324.1 HDOD domain-containing protein -
  ABXU54_RS27780 - 5984277..5984669 (-) 393 WP_003096629.1 hypothetical protein -
  ABXU54_RS27785 - 5984805..5985077 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  ABXU54_RS27790 alkT 5985279..5986433 (-) 1155 WP_009877267.1 rubredoxin-NAD(+) reductase AlkT -
  ABXU54_RS27795 - 5986485..5986652 (-) 168 WP_003098329.1 rubredoxin -
  ABXU54_RS27800 - 5986836..5987003 (-) 168 WP_003098330.1 rubredoxin -
  ABXU54_RS27805 - 5987137..5987538 (-) 402 WP_003098332.1 heme-binding protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76178.88 Da        Isoelectric Point: 7.2591

>NTDB_id=915899 ABXU54_RS27770 WP_003096624.1 5980631..5982706(+) (recG) [Pseudomonas aeruginosa strain P113]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=915899 ABXU54_RS27770 WP_003096624.1 5980631..5982706(+) (recG) [Pseudomonas aeruginosa strain P113]
ATGACCGAGCTGTCCAGGGTCCCGGTTACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGATATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGACTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGCTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAGCCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGTGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCACACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJ60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489
  recG/mmsA Streptococcus pneumoniae R6

40.868

96.671

0.395
  recG/mmsA Streptococcus pneumoniae R36A

40.868

96.671

0.395
  recG Bacillus subtilis subsp. subtilis str. 168

40.356

97.54

0.394