Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Sj15T_RS15290 Genome accession   NZ_AP025355
Coordinates   3111782..3112339 (+) Length   185 a.a.
NCBI ID   WP_007686985.1    Uniprot ID   A0A4Q4J2S9
Organism   Sphingobium sp. TA15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3106782..3117339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sj15T_RS15265 (Sj15T_30280) ribH 3107146..3107568 (+) 423 WP_007686994.1 6,7-dimethyl-8-ribityllumazine synthase -
  Sj15T_RS15270 (Sj15T_30290) - 3107623..3108705 (-) 1083 WP_013038923.1 alkene reductase -
  Sj15T_RS15275 (Sj15T_30300) - 3108888..3109553 (+) 666 WP_037511844.1 COQ9 family protein -
  Sj15T_RS15280 (Sj15T_30310) - 3109642..3109899 (+) 258 WP_007686988.1 FeoA family protein -
  Sj15T_RS15285 (Sj15T_30320) - 3109896..3111755 (+) 1860 WP_013038925.1 ferrous iron transporter B -
  Sj15T_RS15290 (Sj15T_30330) ssb 3111782..3112339 (+) 558 WP_007686985.1 single-stranded DNA-binding protein Machinery gene
  Sj15T_RS15295 (Sj15T_30340) purH 3112697..3114286 (+) 1590 WP_013038926.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  Sj15T_RS15300 (Sj15T_30350) - 3114838..3115179 (+) 342 WP_013038928.1 UrcA family protein -
  Sj15T_RS15305 (Sj15T_30360) - 3115325..3116851 (+) 1527 WP_013038929.1 NAD(P)/FAD-dependent oxidoreductase -
  Sj15T_RS15310 (Sj15T_30370) - 3116857..3117276 (+) 420 WP_007686977.1 GtrA family protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 18999.67 Da        Isoelectric Point: 5.0179

>NTDB_id=91580 Sj15T_RS15290 WP_007686985.1 3111782..3112339(+) (ssb) [Sphingobium sp. TA15]
MAGSVNKVILVGNLGADPEVKSFQNGGKVCNLRIATSESWKDRMSGERKERTEWHSVAIFSEGLAGVAERFLRKGSKVYL
EGQLRTRKWQDQSGNDRYTTEVVLQGPGAVLTMLDGAPGGGGQGGGGRSQGGGDWSGGSSGFGGGDYDDFGGGGFGGGSG
RSSGGGRGSAGGPNFDNDLDDEVPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=91580 Sj15T_RS15290 WP_007686985.1 3111782..3112339(+) (ssb) [Sphingobium sp. TA15]
ATGGCGGGTTCGGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCGCCGACCCGGAGGTCAAGAGCTTTCAGAATGGCGG
GAAGGTGTGCAACCTGCGGATCGCGACCTCCGAAAGCTGGAAGGACCGCATGTCGGGCGAGCGCAAGGAGCGCACCGAAT
GGCACAGCGTGGCGATCTTCTCCGAAGGGCTGGCCGGCGTGGCCGAACGCTTCCTGCGCAAGGGGTCGAAAGTCTATCTG
GAGGGCCAGCTCCGCACCCGCAAATGGCAGGACCAGTCGGGCAATGACCGCTACACCACCGAAGTGGTGCTGCAGGGTCC
GGGCGCGGTGCTGACCATGCTTGACGGCGCGCCGGGCGGCGGCGGCCAGGGCGGCGGTGGCCGCTCCCAGGGCGGCGGCG
ACTGGAGCGGCGGGTCGAGCGGCTTTGGCGGCGGCGATTATGACGATTTCGGCGGCGGCGGCTTCGGCGGCGGTTCCGGC
CGCTCCTCCGGCGGCGGGCGCGGCAGCGCGGGCGGGCCGAATTTCGACAATGACCTGGACGATGAAGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q4J2S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.492
  ssb Vibrio cholerae strain A1552

45.652

99.459

0.454

Multiple sequence alignment