Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   U6038_RS02740 Genome accession   NZ_CP140715
Coordinates   574643..575041 (+) Length   132 a.a.
NCBI ID   WP_333655173.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 569643..580041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS02725 (U6038_02725) - 570631..572937 (+) 2307 WP_004979149.1 RelA/SpoT family protein -
  U6038_RS02730 (U6038_02730) - 572977..573744 (-) 768 Protein_517 SDR family oxidoreductase -
  U6038_RS02735 (U6038_02735) mazG 573863..574624 (+) 762 WP_205667126.1 nucleoside triphosphate pyrophosphohydrolase -
  U6038_RS02740 (U6038_02740) comEA 574643..575041 (+) 399 WP_333655173.1 ComEA family DNA-binding protein Machinery gene
  U6038_RS02745 (U6038_02745) pcnB 575179..576648 (+) 1470 WP_333641305.1 polynucleotide adenylyltransferase PcnB -
  U6038_RS02750 (U6038_02750) folK 576645..577133 (+) 489 WP_004692303.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  U6038_RS02755 (U6038_02755) panB 577170..577979 (+) 810 WP_333655175.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  U6038_RS02760 (U6038_02760) panC 577983..578825 (+) 843 WP_279736624.1 pantoate--beta-alanine ligase -
  U6038_RS02765 (U6038_02765) rapZ 578852..579703 (+) 852 WP_004692298.1 RNase adapter RapZ -
  U6038_RS02770 (U6038_02770) - 579700..579969 (+) 270 WP_333655180.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14655.11 Da        Isoelectric Point: 10.8498

>NTDB_id=915114 U6038_RS02740 WP_333655173.1 574643..575041(+) (comEA) [Acinetobacter johnsonii strain FAHZZU3110hy]
MIKIKVSLLIIALLLLSLLAWVPSSYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQAQPVSSTNKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=915114 U6038_RS02740 WP_333655173.1 574643..575041(+) (comEA) [Acinetobacter johnsonii strain FAHZZU3110hy]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTTTACTGGCTTGGGTACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTACCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCTCCTAAAAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTCGAGCACAAATAAAATTAGTTTAAATCAAGCCAGTGTTGAT
CAATTACAGCAACTTCAGGGTGTGGGTCTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAACTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACCCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(68-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

54.918

92.424

0.508
  comEA Acinetobacter baumannii D1279779

52.419

93.939

0.492
  comEA Acinetobacter baylyi ADP1

44.86

81.061

0.364