Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   TQH59_RS05460 Genome accession   NZ_CP140708
Coordinates   1111318..1112025 (-) Length   235 a.a.
NCBI ID   WP_279669836.1    Uniprot ID   A0AA42MU14
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106318..1117025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS05440 (TQH59_05440) - 1107116..1108435 (+) 1320 WP_004696178.1 adenylosuccinate synthase -
  TQH59_RS05445 (TQH59_05445) - 1108636..1108941 (+) 306 WP_125281302.1 hypothetical protein -
  TQH59_RS05450 (TQH59_05450) - 1109128..1109901 (+) 774 WP_125281301.1 M48 family metallopeptidase -
  TQH59_RS05455 (TQH59_05455) - 1110082..1111131 (-) 1050 WP_279669835.1 NADP(H)-dependent aldo-keto reductase -
  TQH59_RS05460 (TQH59_05460) crp 1111318..1112025 (-) 708 WP_279669836.1 cAMP-activated global transcriptional regulator CRP Regulator
  TQH59_RS05465 (TQH59_05465) - 1112173..1112595 (+) 423 WP_279669837.1 OsmC family protein -
  TQH59_RS05470 (TQH59_05470) clpB 1112992..1115565 (+) 2574 Protein_1050 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26398.97 Da        Isoelectric Point: 4.6788

>NTDB_id=915075 TQH59_RS05460 WP_279669836.1 1111318..1112025(-) (crp) [Acinetobacter johnsonii strain FAHZZU3567hy]
MTSSFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANSQRTAEVRTRDVCEIAEVTYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEESKANADDYEDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=915075 TQH59_RS05460 WP_279669836.1 1111318..1112025(-) (crp) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGACTTCAAGCTTTTCACAATTAAGCACTGATGCGCTGTCTCCAGGTCAACTCCCAGAGTCAGTGAAAGCACTATTAAA
ACGCGCATATATTAATCGTTATCCAAAGCGCACAACGATCGTAGATGCTGGCTCAGAATCTAAATCTTTATATTTGATTT
TAAAAGGTTCGGTCTCTATTATTTTGCGTGAAGACGATGAACGTGAAATCGTGGTCGCTTATTTAAATGCGGGTGACTTT
TTTGGTGAAATGGGTCTATTCGAAGCAAATTCACAGCGTACTGCTGAAGTACGTACACGTGACGTTTGTGAAATTGCTGA
AGTGACTTATGAAAACTTCCATGAATTGAGCAAACAATACCCAGACCTCAGCTATGCAGTTTTTGCACAGCTTGTGCGTC
GTCTAAAAAACACCACGCGTAAAGTCACTGACCTTGCATTTATTGATGTTTCAGGTCGTATTGCACGTTGTCTTATTGAC
TTATCTGCTCAACCAGAAGCAATGATCTTACCTAATGGCCGTCAAATCCGTATTACACGTCAAGAGATTGGACGTATTGT
CGGTTGTTCACGTGAAATGGTTGGTCGTGTTTTGAAAACACTCGAAGAGCAAGGCATGATCGAAACTGATGGTAAAGCCA
TCTTAATTTTTGATGCCTCTTTAGAAGAGTCAAAAGCGAATGCTGATGACTATGAAGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

90.638

100

0.906
  crp Vibrio cholerae strain A1552

46.602

87.66

0.409
  crp Haemophilus influenzae Rd KW20

48.205

82.979

0.4