Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   TQH59_RS02760 Genome accession   NZ_CP140708
Coordinates   573781..574179 (+) Length   132 a.a.
NCBI ID   WP_114836792.1    Uniprot ID   A0A7H8SDP5
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 568781..579179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS02745 (TQH59_02745) - 569769..572075 (+) 2307 WP_333641299.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  TQH59_RS02750 (TQH59_02750) - 572115..572882 (-) 768 WP_333641301.1 SDR family oxidoreductase -
  TQH59_RS02755 (TQH59_02755) mazG 573001..573762 (+) 762 WP_279676989.1 nucleoside triphosphate pyrophosphohydrolase -
  TQH59_RS02760 (TQH59_02760) comEA 573781..574179 (+) 399 WP_114836792.1 ComEA family DNA-binding protein Machinery gene
  TQH59_RS02765 (TQH59_02765) pcnB 574317..575786 (+) 1470 WP_333641305.1 polynucleotide adenylyltransferase PcnB -
  TQH59_RS02770 (TQH59_02770) folK 575783..576271 (+) 489 WP_004692303.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  TQH59_RS02775 (TQH59_02775) panB 576308..577117 (+) 810 WP_279693364.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  TQH59_RS02780 (TQH59_02780) panC 577121..577963 (+) 843 WP_333641310.1 pantoate--beta-alanine ligase -
  TQH59_RS02785 (TQH59_02785) rapZ 577990..578841 (+) 852 WP_004692298.1 RNase adapter RapZ -
  TQH59_RS02790 (TQH59_02790) - 578838..579107 (+) 270 WP_058868961.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14651.16 Da        Isoelectric Point: 10.8498

>NTDB_id=915073 TQH59_RS02760 WP_114836792.1 573781..574179(+) (comEA) [Acinetobacter johnsonii strain FAHZZU3567hy]
MIKIKVSLLIIALLLLSLLAWVPSSYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQAQPVLSANKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=915073 TQH59_RS02760 WP_114836792.1 573781..574179(+) (comEA) [Acinetobacter johnsonii strain FAHZZU3567hy]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTCTACTGGCTTGGGTACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTACCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCGCCAAAGAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTTGAGCGCAAATAAAATTAGTTTAAATCAAGCCAGTGTCGAT
CAATTACAGCAGCTTCAGGGTGTGGGTTTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAACTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACCCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SDP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

53.279

92.424

0.492
  comEA Acinetobacter baumannii D1279779

50.806

93.939

0.477
  comEA Acinetobacter baylyi ADP1

44.86

81.061

0.364