Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   U6037_RS21205 Genome accession   NZ_CP140706
Coordinates   4822111..4824345 (-) Length   744 a.a.
NCBI ID   WP_322844423.1    Uniprot ID   -
Organism   Pseudomonas sp. B33.4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4817111..4829345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6037_RS21170 murB 4817491..4818510 (-) 1020 WP_322844420.1 UDP-N-acetylmuramate dehydrogenase -
  U6037_RS21175 - 4818507..4818971 (-) 465 WP_064391519.1 low molecular weight protein-tyrosine-phosphatase -
  U6037_RS21180 kdsB 4818971..4819735 (-) 765 WP_322844421.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U6037_RS21185 - 4819732..4819917 (-) 186 WP_003174668.1 Trm112 family protein -
  U6037_RS21190 lpxK 4819939..4820949 (-) 1011 WP_322844422.1 tetraacyldisaccharide 4'-kinase -
  U6037_RS21195 - 4820949..4821377 (-) 429 WP_007908223.1 ExbD/TolR family protein -
  U6037_RS21200 exbB 4821374..4822009 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U6037_RS21205 comA 4822111..4824345 (-) 2235 WP_322844423.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U6037_RS21210 - 4824482..4825000 (+) 519 WP_322844424.1 DUF2062 domain-containing protein -
  U6037_RS21215 - 4825079..4825858 (-) 780 WP_322844425.1 ABC transporter permease -
  U6037_RS21220 - 4825855..4826787 (-) 933 WP_158829190.1 ABC transporter ATP-binding protein -
  U6037_RS21225 - 4826911..4827534 (-) 624 WP_322844426.1 glutathione S-transferase -
  U6037_RS21230 - 4827578..4828237 (-) 660 WP_322844427.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81945.25 Da        Isoelectric Point: 10.4340

>NTDB_id=915039 U6037_RS21205 WP_322844423.1 4822111..4824345(-) (comA) [Pseudomonas sp. B33.4]
MRTGMMALAVGLLAPVFMPALPPVWLMLLLPVVALMLLPFRSYPLAFLLFGFTWTSVGAQWALNDRLPNGLDGETRWVEG
RVVGLPQNSDGVVRFELADAHSRHEKLPALMRLAWYAGPPVNSGERWRLAVKLKRPGGLRNPEAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDGIRQRLLSVDAQGRNGALAALVLGDGSGLSREDWQILQNTGTVHLLVISGQHIGLLAAVMYGL
VAGLARFGLWPLRWPWLPWACGLAFAAGFGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLLDPL
ASLRPGLWLSFAAVSVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPMLLALNLPISLSGPLANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGAGLLWLAGGLIDGLFRTLAIMAGHWPAWIAPSIPVWVLVAGSLGAVLLLLPRGVPMRPLGWPLLLLLV
VPPRERLDAGLADIWQLDVGQGLAILIRTRHHMLLYDAGPRFGDFDLGERVVLPALRKLRVEKLDLMLLSHADADHAGGA
LAINRGLTVDQVISGDPAGLPAQLSAEACESGRQWQWDGVAFQLWQWPDARDSNQRSCVLQIEANGERLLLTGDIDTHAE
RALLDSPLAVPTQWLQSPHHGSRSSSSMALLRVLQPEAVLISRGQGNSFGHPHPTVLARYRKLGLRIYDSAEEGAIHLQL
GRFKAPWTMRQQRRFWRDPPALVR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=915039 U6037_RS21205 WP_322844423.1 4822111..4824345(-) (comA) [Pseudomonas sp. B33.4]
ATGCGCACAGGGATGATGGCGCTTGCGGTCGGTCTGCTGGCCCCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGGTCGTGGCTTTGATGCTGCTGCCGTTTCGCAGTTATCCATTGGCGTTTTTGCTGTTTGGCTTCACGT
GGACCAGTGTCGGCGCGCAGTGGGCGCTGAATGATCGTTTACCGAACGGGCTGGATGGAGAAACCCGGTGGGTTGAAGGG
CGGGTCGTCGGTTTGCCGCAGAACAGCGACGGCGTGGTGCGCTTCGAATTGGCCGATGCGCACTCGCGTCACGAAAAATT
GCCGGCGCTGATGCGACTCGCCTGGTACGCCGGGCCGCCGGTCAACAGTGGCGAGCGCTGGCGCTTGGCGGTCAAGCTCA
AGCGTCCCGGTGGTTTACGCAACCCCGAGGCTTTCGATTATGAGGCCTGGCTGTTGGCGCAACGTATTGGAGCGACCGGT
ACGATCAAGGACGGCCAGCGATTGAGCGAAGCACGCTGGGCCTGGCGTGACGGTATTCGCCAGCGTTTGCTGAGCGTGGA
TGCGCAAGGGCGAAACGGCGCACTGGCGGCGCTGGTGCTGGGCGATGGCTCGGGGCTCAGTCGCGAGGACTGGCAGATTC
TGCAGAACACCGGCACCGTTCACTTGCTGGTGATTTCCGGTCAGCACATCGGTTTGCTGGCGGCGGTGATGTATGGGCTG
GTCGCAGGGTTGGCGCGATTTGGCCTGTGGCCATTGCGTTGGCCGTGGCTGCCATGGGCCTGTGGGCTGGCGTTCGCGGC
GGGGTTTGGTTATGGCCTGCTCGCCGGGTTCGATGTGCCGGTGCAGCGGGCCTGCGTGATGGTCGCGCTGGTGCTGTTAT
GGCGTCTGCGCTTTCGCCATCTCGGGGCATGGTGGCCGCTGCTGCTGGCGTTCAATGGTGTGTTGCTGCTGGATCCGCTC
GCCAGCTTGCGTCCGGGTTTGTGGCTCTCCTTTGCGGCAGTGTCCGTGCTGATTTTTACTTTTGGCGGTCGCTTGGGGGC
GTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAATGGCTGATTGCGATCGGTTTGTGCCCGATGTTGCTGGCATTGAACC
TGCCGATCAGTCTCAGCGGGCCGCTGGCTAATCTGCTTGCAGTGCCTTGGGTCAGTCTTGTCGTGCTGCCGCCGGCGTTG
CTCGGGACGCTGTTGTTGCCGGTTCCGTATGTCGGCGCAGGGCTGCTGTGGCTGGCGGGTGGTCTGATCGACGGGTTGTT
TCGCACGCTGGCGATAATGGCCGGGCATTGGCCTGCATGGATCGCACCCTCGATACCCGTCTGGGTCTTGGTTGCTGGCA
GCCTCGGCGCGGTGTTGTTGCTATTGCCGCGCGGCGTGCCAATGCGCCCGCTGGGCTGGCCATTGCTGTTGCTGCTGGTG
GTGCCGCCACGCGAACGCCTGGATGCGGGATTGGCCGACATCTGGCAACTGGATGTCGGCCAAGGCCTGGCCATCCTGAT
CCGCACCCGGCATCACATGTTGCTCTATGACGCTGGGCCGCGCTTCGGTGATTTCGATCTCGGCGAGCGGGTGGTGCTGC
CCGCGTTGCGCAAACTGAGAGTGGAAAAACTCGATCTGATGCTGCTCAGCCATGCGGATGCCGATCACGCGGGTGGCGCT
CTGGCGATCAACCGTGGTTTGACCGTCGATCAAGTAATCAGCGGCGACCCGGCGGGACTGCCTGCGCAACTGAGCGCCGA
AGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGGGTCGCTTTTCAACTCTGGCAGTGGCCGGACGCCCGCGACAGCA
ATCAGCGCTCCTGCGTCTTGCAAATCGAGGCCAATGGCGAGCGCCTGTTGCTGACCGGCGACATCGACACCCACGCCGAA
CGCGCGCTGCTCGACAGTCCATTGGCTGTGCCGACGCAATGGCTGCAATCACCCCATCACGGTAGCCGAAGTTCATCGTC
AATGGCGCTGCTCAGGGTGTTGCAACCAGAGGCCGTGCTGATTTCCCGTGGGCAGGGCAATTCCTTCGGCCATCCGCATC
CGACCGTGCTGGCGCGTTATCGCAAACTGGGCCTGCGCATTTACGACAGCGCCGAGGAGGGCGCCATTCATCTGCAACTG
GGCCGCTTCAAAGCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCGCCGGCGCTTGTCCGTTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.453

96.237

0.591
  comA Ralstonia pseudosolanacearum GMI1000

32.593

100

0.375