Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U6037_RS21200 Genome accession   NZ_CP140706
Coordinates   4821374..4822009 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. B33.4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4816374..4827009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6037_RS21165 - 4816707..4817177 (-) 471 WP_016986039.1 (2Fe-2S)-binding protein -
  U6037_RS21170 murB 4817491..4818510 (-) 1020 WP_322844420.1 UDP-N-acetylmuramate dehydrogenase -
  U6037_RS21175 - 4818507..4818971 (-) 465 WP_064391519.1 low molecular weight protein-tyrosine-phosphatase -
  U6037_RS21180 kdsB 4818971..4819735 (-) 765 WP_322844421.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U6037_RS21185 - 4819732..4819917 (-) 186 WP_003174668.1 Trm112 family protein -
  U6037_RS21190 lpxK 4819939..4820949 (-) 1011 WP_322844422.1 tetraacyldisaccharide 4'-kinase -
  U6037_RS21195 - 4820949..4821377 (-) 429 WP_007908223.1 ExbD/TolR family protein -
  U6037_RS21200 exbB 4821374..4822009 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U6037_RS21205 comA 4822111..4824345 (-) 2235 WP_322844423.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U6037_RS21210 - 4824482..4825000 (+) 519 WP_322844424.1 DUF2062 domain-containing protein -
  U6037_RS21215 - 4825079..4825858 (-) 780 WP_322844425.1 ABC transporter permease -
  U6037_RS21220 - 4825855..4826787 (-) 933 WP_158829190.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=915038 U6037_RS21200 WP_007908216.1 4821374..4822009(-) (exbB) [Pseudomonas sp. B33.4]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=915038 U6037_RS21200 WP_007908216.1 4821374..4822009(-) (exbB) [Pseudomonas sp. B33.4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCCGCCGGCCTGGCTAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCGCGGGTCATTCACGAACTCGAGCGCTACGT
TAACGCGCTGGGCACCATCGCTGCGATGTCGCCGTTGCTCGGCCTGCTGGGCACCGTGTTAGGCATGATCGACATTTTCA
GCGCCTTCACTGGCTCAGGCATGACCACCAACGCCTCGGTATTGGCCGGTGGTATCTCCAAAGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCAGCGGTATTCTTCCACCGGTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848