Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   L6430_RS18895 Genome accession   NZ_AP025342
Coordinates   3745220..3745816 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus paralicheniformis strain J41TS8     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3740220..3750816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6430_RS18855 - 3741238..3741744 (-) 507 WP_003182879.1 PTS sugar transporter subunit IIA -
  L6430_RS18860 - 3741920..3742339 (+) 420 WP_003182880.1 hypothetical protein -
  L6430_RS18865 - 3742358..3742801 (-) 444 WP_003182882.1 YppG family protein -
  L6430_RS18870 - 3742981..3743181 (+) 201 WP_011198064.1 YppF family protein -
  L6430_RS18875 - 3743214..3743585 (-) 372 WP_003182887.1 YppE family protein -
  L6430_RS18880 - 3743643..3743870 (-) 228 WP_003182890.1 YppD family protein -
  L6430_RS18885 sspM 3744070..3744174 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  L6430_RS18890 - 3744207..3745166 (-) 960 WP_003182894.1 DUF2515 domain-containing protein -
  L6430_RS18895 recU 3745220..3745816 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  L6430_RS18900 - 3745874..3748561 (+) 2688 WP_009328005.1 penicillin-binding protein 1A -
  L6430_RS18905 - 3748582..3749085 (-) 504 WP_003182901.1 YpoC family protein -
  L6430_RS18910 nth 3749082..3749744 (-) 663 WP_212930575.1 endonuclease III -
  L6430_RS18915 - 3749761..3750459 (-) 699 WP_003182905.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=91487 L6430_RS18895 WP_003182896.1 3745220..3745816(+) (recU) [Bacillus paralicheniformis strain J41TS8]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=91487 L6430_RS18895 WP_003182896.1 3745220..3745816(+) (recU) [Bacillus paralicheniformis strain J41TS8]
GTGATTCGTTACCCGAACGGCAAATCCTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACACCTGTACAGATTGTCCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTTATCAAAGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACAAAGAGCCGAACCTC
GTTCCCGCTTCAGAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCCATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833

Multiple sequence alignment