Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   S0I03_RS12205 Genome accession   NZ_CP140613
Coordinates   2502989..2503324 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain WN-I     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2497989..2508324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S0I03_RS12185 gcvT 2498595..2499695 (-) 1101 WP_014418366.1 glycine cleavage system aminomethyltransferase GcvT -
  S0I03_RS12190 - 2500119..2501789 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  S0I03_RS12195 - 2501811..2502605 (+) 795 WP_014418368.1 YqhG family protein -
  S0I03_RS12200 sinI 2502782..2502955 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  S0I03_RS12205 sinR 2502989..2503324 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  S0I03_RS12210 tasA 2503372..2504157 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  S0I03_RS12215 sipW 2504222..2504806 (-) 585 WP_014418370.1 signal peptidase I SipW -
  S0I03_RS12220 tapA 2504778..2505449 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  S0I03_RS12225 - 2505708..2506037 (+) 330 WP_014418372.1 DUF3889 domain-containing protein -
  S0I03_RS12230 - 2506078..2506257 (-) 180 WP_003153093.1 YqzE family protein -
  S0I03_RS12235 comGG 2506314..2506691 (-) 378 WP_014418373.1 competence type IV pilus minor pilin ComGG Machinery gene
  S0I03_RS12240 comGF 2506692..2507087 (-) 396 WP_014721501.1 competence type IV pilus minor pilin ComGF -
  S0I03_RS12245 comGE 2507101..2507415 (-) 315 WP_032863566.1 competence type IV pilus minor pilin ComGE Machinery gene
  S0I03_RS12250 comGD 2507399..2507836 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  S0I03_RS12255 comGC 2507826..2508134 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=914840 S0I03_RS12205 WP_003153104.1 2502989..2503324(+) (sinR) [Bacillus velezensis strain WN-I]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=914840 S0I03_RS12205 WP_003153104.1 2502989..2503324(+) (sinR) [Bacillus velezensis strain WN-I]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991