Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   SPG78_RS01730 Genome accession   NZ_CP140483
Coordinates   346604..347404 (+) Length   266 a.a.
NCBI ID   WP_000840087.1    Uniprot ID   -
Organism   Helicobacter pylori strain 51N     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 341604..352404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG78_RS01695 pseH 342103..342645 (+) 543 WP_000742645.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  SPG78_RS01700 - 342578..343516 (-) 939 WP_000833953.1 tetraacyldisaccharide 4'-kinase -
  SPG78_RS01705 - 343513..344295 (-) 783 WP_001168221.1 NAD+ synthase -
  SPG78_RS01715 ilvC 344544..345536 (+) 993 WP_001207775.1 ketol-acid reductoisomerase -
  SPG78_RS01720 minD 345556..346362 (+) 807 WP_001029123.1 septum site-determining protein MinD -
  SPG78_RS01725 minE 346359..346592 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  SPG78_RS01730 dprA 346604..347404 (+) 801 WP_000840087.1 DNA-processing protein DprA Machinery gene
  SPG78_RS01735 dprB 347401..347805 (+) 405 WP_000599227.1 Holliday junction resolvase RuvX Machinery gene
  SPG78_RS01740 - 347940..348446 (+) 507 WP_375022932.1 tetratricopeptide repeat protein -
  SPG78_RS01745 - 348517..348612 (+) 96 WP_324185892.1 hypothetical protein -
  SPG78_RS01750 - 348798..349136 (+) 339 WP_000699911.1 hypothetical protein -
  SPG78_RS01755 - 349120..349680 (+) 561 WP_000037123.1 hypothetical protein -
  SPG78_RS01760 - 349691..350029 (+) 339 WP_041202009.1 glycoside hydrolase family protein -
  SPG78_RS01765 - 350046..350192 (+) 147 WP_180594846.1 hypothetical protein -
  SPG78_RS01770 - 350212..350373 (+) 162 WP_001871784.1 hypothetical protein -
  SPG78_RS01775 - 350702..351088 (+) 387 Protein_343 DUF1294 domain-containing protein -
  SPG78_RS01780 - 351088..351873 (+) 786 WP_000488074.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29797.72 Da        Isoelectric Point: 8.8983

>NTDB_id=914439 SPG78_RS01730 WP_000840087.1 346604..347404(+) (dprA) [Helicobacter pylori strain 51N]
MKSNFQYSALENIPKAFDILKDPPKKLYCVGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEKKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=914439 SPG78_RS01730 WP_000840087.1 346604..347404(+) (dprA) [Helicobacter pylori strain 51N]
ATGAAAAGCAACTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGCGTGGGCGATATAAAACTTTTAGACGCGCCTTTAAAAGTGGCTATCATCGGCACGAGAAGACCCACCCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATACGAAAAGGATTTTATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGCGGTAATTATCCCCCAAGCGGATTTGAAAAGCGGC
TCTATGAGCAGCGCAAGATTAGCCCAAAAATATCAAAAACCCTTATTTGTTTTGCCCCAGCGCCTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAGGAAATGCCTGAAAAGAAAGACGAATTTTTAGAATATTGCGCCAAAAACCCGAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGACAAGCTTTTAGAATATGAGCTGTTGGGTAAGATTAAACGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.617

100

0.966
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414