Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   SPG78_RS01735 Genome accession   NZ_CP140483
Coordinates   347401..347805 (+) Length   134 a.a.
NCBI ID   WP_000599227.1    Uniprot ID   A0AAI7ZV34
Organism   Helicobacter pylori strain 51N     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 342401..352805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG78_RS01700 - 342578..343516 (-) 939 WP_000833953.1 tetraacyldisaccharide 4'-kinase -
  SPG78_RS01705 - 343513..344295 (-) 783 WP_001168221.1 NAD+ synthase -
  SPG78_RS01715 ilvC 344544..345536 (+) 993 WP_001207775.1 ketol-acid reductoisomerase -
  SPG78_RS01720 minD 345556..346362 (+) 807 WP_001029123.1 septum site-determining protein MinD -
  SPG78_RS01725 minE 346359..346592 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  SPG78_RS01730 dprA 346604..347404 (+) 801 WP_000840087.1 DNA-processing protein DprA Machinery gene
  SPG78_RS01735 dprB 347401..347805 (+) 405 WP_000599227.1 Holliday junction resolvase RuvX Machinery gene
  SPG78_RS01740 - 347940..348446 (+) 507 WP_375022932.1 tetratricopeptide repeat protein -
  SPG78_RS01745 - 348517..348612 (+) 96 WP_324185892.1 hypothetical protein -
  SPG78_RS01750 - 348798..349136 (+) 339 WP_000699911.1 hypothetical protein -
  SPG78_RS01755 - 349120..349680 (+) 561 WP_000037123.1 hypothetical protein -
  SPG78_RS01760 - 349691..350029 (+) 339 WP_041202009.1 glycoside hydrolase family protein -
  SPG78_RS01765 - 350046..350192 (+) 147 WP_180594846.1 hypothetical protein -
  SPG78_RS01770 - 350212..350373 (+) 162 WP_001871784.1 hypothetical protein -
  SPG78_RS01775 - 350702..351088 (+) 387 Protein_343 DUF1294 domain-containing protein -
  SPG78_RS01780 - 351088..351873 (+) 786 WP_000488074.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15197.68 Da        Isoelectric Point: 8.4869

>NTDB_id=914440 SPG78_RS01735 WP_000599227.1 347401..347805(+) (dprB) [Helicobacter pylori strain 51N]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNACIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=914440 SPG78_RS01735 WP_000599227.1 347401..347805(+) (dprB) [Helicobacter pylori strain 51N]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAACGAAAGCTATGCGGACACGAATGCGTGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.985

99.254

0.933