Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   U2S75_RS18105 Genome accession   NZ_CP140420
Coordinates   3789702..3790520 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3784702..3795520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS18090 (U2S75_18085) pilE 3784919..3785344 (-) 426 WP_000788341.1 type IV pilin protein Machinery gene
  U2S75_RS18095 (U2S75_18090) pilY2 3785341..3785823 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  U2S75_RS18100 (U2S75_18095) pilY1 3785836..3789690 (-) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  U2S75_RS18105 (U2S75_18100) pilX 3789702..3790520 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U2S75_RS18110 (U2S75_18105) pilW 3790517..3791518 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  U2S75_RS18115 (U2S75_18110) pilV 3791519..3792079 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U2S75_RS18120 (U2S75_18115) fimU 3792073..3792546 (-) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U2S75_RS18125 (U2S75_18120) ispH 3792716..3793666 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U2S75_RS18130 (U2S75_18125) gmk 3793789..3794418 (+) 630 WP_000015937.1 guanylate kinase -
  U2S75_RS18135 (U2S75_18130) rpoZ 3794491..3794769 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U2S75_RS18140 (U2S75_18135) - 3794808..3794938 (+) 131 Protein_3547 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=914192 U2S75_RS18105 WP_000149374.1 3789702..3790520(-) (pilX) [Acinetobacter baumannii strain 2023CK-00893]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=914192 U2S75_RS18105 WP_000149374.1 3789702..3790520(-) (pilX) [Acinetobacter baumannii strain 2023CK-00893]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993