Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   U2S75_RS18120 Genome accession   NZ_CP140420
Coordinates   3792073..3792546 (-) Length   157 a.a.
NCBI ID   WP_001214064.1    Uniprot ID   A0A0J8UYN3
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3787073..3797546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS18105 (U2S75_18100) pilX 3789702..3790520 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U2S75_RS18110 (U2S75_18105) pilW 3790517..3791518 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  U2S75_RS18115 (U2S75_18110) pilV 3791519..3792079 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  U2S75_RS18120 (U2S75_18115) fimU 3792073..3792546 (-) 474 WP_001214064.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  U2S75_RS18125 (U2S75_18120) ispH 3792716..3793666 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U2S75_RS18130 (U2S75_18125) gmk 3793789..3794418 (+) 630 WP_000015937.1 guanylate kinase -
  U2S75_RS18135 (U2S75_18130) rpoZ 3794491..3794769 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  U2S75_RS18140 (U2S75_18135) - 3794808..3794938 (+) 131 Protein_3547 hypothetical protein -
  U2S75_RS18145 (U2S75_18140) - 3794978..3797083 (+) 2106 WP_064193098.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16850.43 Da        Isoelectric Point: 8.5355

>NTDB_id=914195 U2S75_RS18120 WP_001214064.1 3792073..3792546(-) (fimU) [Acinetobacter baumannii strain 2023CK-00893]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=914195 U2S75_RS18120 WP_001214064.1 3792073..3792546(-) (fimU) [Acinetobacter baumannii strain 2023CK-00893]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCCGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8UYN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994