Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   U2S75_RS18095 Genome accession   NZ_CP140420
Coordinates   3785341..3785823 (-) Length   160 a.a.
NCBI ID   WP_001046421.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2023CK-00893     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3780341..3790823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2S75_RS18060 (U2S75_18055) - 3780452..3781483 (+) 1032 WP_064193095.1 lipase secretion chaperone -
  U2S75_RS18065 (U2S75_18060) - 3781598..3782539 (+) 942 WP_085943440.1 triacylglycerol lipase -
  U2S75_RS18070 (U2S75_18065) rplS 3782591..3782959 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  U2S75_RS18075 (U2S75_18070) trmD 3783167..3783907 (-) 741 WP_064193094.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  U2S75_RS18080 (U2S75_18075) rimM 3783953..3784501 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  U2S75_RS18085 (U2S75_18080) rpsP 3784521..3784772 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  U2S75_RS18090 (U2S75_18085) pilE 3784919..3785344 (-) 426 WP_000788341.1 type IV pilin protein Machinery gene
  U2S75_RS18095 (U2S75_18090) pilY2 3785341..3785823 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  U2S75_RS18100 (U2S75_18095) pilY1 3785836..3789690 (-) 3855 WP_000768952.1 PilC/PilY family type IV pilus protein Machinery gene
  U2S75_RS18105 (U2S75_18100) pilX 3789702..3790520 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17563.78 Da        Isoelectric Point: 8.4834

>NTDB_id=914190 U2S75_RS18095 WP_001046421.1 3785341..3785823(-) (pilY2) [Acinetobacter baumannii strain 2023CK-00893]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=914190 U2S75_RS18095 WP_001046421.1 3785341..3785823(-) (pilY2) [Acinetobacter baumannii strain 2023CK-00893]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419