Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABXJ31_RS18850 Genome accession   NZ_CP159644
Coordinates   3880552..3881184 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain Z226-5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3875552..3886184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ31_RS18825 (ABXJ31_18825) yhfG 3875684..3875851 (+) 168 WP_000736860.1 YhfG family protein -
  ABXJ31_RS18830 (ABXJ31_18830) fic 3875841..3876443 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  ABXJ31_RS18835 (ABXJ31_18835) pabA 3876475..3877038 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  ABXJ31_RS18840 (ABXJ31_18840) argD 3877124..3878344 (+) 1221 WP_354142673.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  ABXJ31_RS18845 (ABXJ31_18845) yhfK 3878411..3880501 (-) 2091 WP_001411443.1 YccS/YhfK family putative transporter -
  ABXJ31_RS18850 (ABXJ31_18850) crp 3880552..3881184 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABXJ31_RS18855 (ABXJ31_18855) yhfA 3881486..3881890 (+) 405 WP_001148908.1 OsmC family protein -
  ABXJ31_RS18860 (ABXJ31_18860) prkB 3881945..3882814 (-) 870 WP_354142674.1 phosphoribulokinase -
  ABXJ31_RS18865 (ABXJ31_18865) yheU 3882868..3883086 (-) 219 WP_000907085.1 YheU family protein -
  ABXJ31_RS18870 (ABXJ31_18870) yheT 3883080..3884102 (-) 1023 WP_000057379.1 hydrolase -
  ABXJ31_RS18875 (ABXJ31_18875) yheS 3884102..3886015 (-) 1914 WP_000634789.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=913846 ABXJ31_RS18850 WP_000242755.1 3880552..3881184(-) (crp) [Escherichia coli strain Z226-5]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=913846 ABXJ31_RS18850 WP_000242755.1 3880552..3881184(-) (crp) [Escherichia coli strain Z226-5]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467