Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   U3P88_RS10370 Genome accession   NZ_CP140297
Coordinates   2178802..2179965 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain UMAF6639     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2173802..2184965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS10335 (U3P88_10335) - 2174067..2174486 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  U3P88_RS10340 (U3P88_10340) comFC 2174560..2175036 (-) 477 WP_269465503.1 phosphoribosyltransferase family protein Machinery gene
  U3P88_RS10345 (U3P88_10345) - 2175079..2175237 (-) 159 Protein_2034 double zinc ribbon domain-containing protein -
  U3P88_RS10350 (U3P88_10350) - 2175255..2175539 (-) 285 WP_003151389.1 competence protein ComFB -
  U3P88_RS10355 (U3P88_10355) comFA 2175597..2176982 (-) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  U3P88_RS10360 (U3P88_10360) - 2177090..2177938 (-) 849 WP_061860921.1 DegV family protein -
  U3P88_RS10365 (U3P88_10365) degU 2178036..2178725 (-) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  U3P88_RS10370 (U3P88_10370) degS 2178802..2179965 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  U3P88_RS10375 (U3P88_10375) - 2180188..2180835 (+) 648 WP_007614107.1 YigZ family protein -
  U3P88_RS10380 (U3P88_10380) - 2180840..2182054 (+) 1215 WP_061860923.1 LCP family protein -
  U3P88_RS10385 (U3P88_10385) - 2182144..2183220 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -
  U3P88_RS10390 (U3P88_10390) - 2183353..2184549 (-) 1197 WP_061860924.1 glycosyltransferase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=913545 U3P88_RS10370 WP_007407484.1 2178802..2179965(-) (degS) [Bacillus velezensis strain UMAF6639]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=913545 U3P88_RS10370 WP_007407484.1 2178802..2179965(-) (degS) [Bacillus velezensis strain UMAF6639]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTAGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCGTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTGGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGTTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951