Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   U3P88_RS10365 Genome accession   NZ_CP140297
Coordinates   2178036..2178725 (-) Length   229 a.a.
NCBI ID   WP_061860922.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2173036..2183725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS10325 (U3P88_10325) - 2173234..2173716 (-) 483 WP_003151394.1 flagellar protein FlgN -
  U3P88_RS10330 (U3P88_10330) flgM 2173731..2173997 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  U3P88_RS10335 (U3P88_10335) - 2174067..2174486 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  U3P88_RS10340 (U3P88_10340) comFC 2174560..2175036 (-) 477 WP_269465503.1 phosphoribosyltransferase family protein Machinery gene
  U3P88_RS10345 (U3P88_10345) - 2175079..2175237 (-) 159 Protein_2034 double zinc ribbon domain-containing protein -
  U3P88_RS10350 (U3P88_10350) - 2175255..2175539 (-) 285 WP_003151389.1 competence protein ComFB -
  U3P88_RS10355 (U3P88_10355) comFA 2175597..2176982 (-) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  U3P88_RS10360 (U3P88_10360) - 2177090..2177938 (-) 849 WP_061860921.1 DegV family protein -
  U3P88_RS10365 (U3P88_10365) degU 2178036..2178725 (-) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  U3P88_RS10370 (U3P88_10370) degS 2178802..2179965 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  U3P88_RS10375 (U3P88_10375) - 2180188..2180835 (+) 648 WP_007614107.1 YigZ family protein -
  U3P88_RS10380 (U3P88_10380) - 2180840..2182054 (+) 1215 WP_061860923.1 LCP family protein -
  U3P88_RS10385 (U3P88_10385) - 2182144..2183220 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25894.62 Da        Isoelectric Point: 5.9446

>NTDB_id=913544 U3P88_RS10365 WP_061860922.1 2178036..2178725(-) (degU) [Bacillus velezensis strain UMAF6639]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSVHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=913544 U3P88_RS10365 WP_061860922.1 2178036..2178725(-) (degU) [Bacillus velezensis strain UMAF6639]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGTTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996