Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   U3P88_RS10340 Genome accession   NZ_CP140297
Coordinates   2174560..2175036 (-) Length   158 a.a.
NCBI ID   WP_269465503.1    Uniprot ID   -
Organism   Bacillus velezensis strain UMAF6639     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2169560..2180036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3P88_RS10305 (U3P88_10305) fliW 2169651..2170082 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  U3P88_RS10310 (U3P88_10310) - 2170112..2170681 (-) 570 WP_007407476.1 DUF6470 family protein -
  U3P88_RS10315 (U3P88_10315) flgL 2170772..2171689 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  U3P88_RS10320 (U3P88_10320) flgK 2171701..2173218 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  U3P88_RS10325 (U3P88_10325) - 2173234..2173716 (-) 483 WP_003151394.1 flagellar protein FlgN -
  U3P88_RS10330 (U3P88_10330) flgM 2173731..2173997 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  U3P88_RS10335 (U3P88_10335) - 2174067..2174486 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  U3P88_RS10340 (U3P88_10340) comFC 2174560..2175036 (-) 477 WP_269465503.1 phosphoribosyltransferase family protein Machinery gene
  U3P88_RS10345 (U3P88_10345) - 2175079..2175237 (-) 159 Protein_2034 double zinc ribbon domain-containing protein -
  U3P88_RS10350 (U3P88_10350) - 2175255..2175539 (-) 285 WP_003151389.1 competence protein ComFB -
  U3P88_RS10355 (U3P88_10355) comFA 2175597..2176982 (-) 1386 WP_061860920.1 DEAD/DEAH box helicase Machinery gene
  U3P88_RS10360 (U3P88_10360) - 2177090..2177938 (-) 849 WP_061860921.1 DegV family protein -
  U3P88_RS10365 (U3P88_10365) degU 2178036..2178725 (-) 690 WP_061860922.1 two-component system response regulator DegU Regulator
  U3P88_RS10370 (U3P88_10370) degS 2178802..2179965 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17473.08 Da        Isoelectric Point: 10.2452

>NTDB_id=913542 U3P88_RS10340 WP_269465503.1 2174560..2175036(-) (comFC) [Bacillus velezensis strain UMAF6639]
MLRQNRSVYLYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNKHTLIPIPLSGERLAERGFNQSELLASLLGM
PVIFPLIRLNNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 477 bp        

>NTDB_id=913542 U3P88_RS10340 WP_269465503.1 2174560..2175036(-) (comFC) [Bacillus velezensis strain UMAF6639]
TTGCTGCGGCAAAACCGTTCGGTATATTTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGA
TGCGAAAATCATTCAAGCATTTGAACGTGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATAAACATACTCTCA
TCCCTATTCCGCTGAGCGGCGAACGGCTGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATG
CCCGTCATTTTCCCCCTCATCCGACTGAACAATGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAA
AAAGTTTTCAGCAGCCGAAAACTCCGCCGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACAC
TTCACCAAGCCGCCGAAGTCCTGCTGACAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(73-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

67.089

100

0.671