Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   U2873_RS17010 Genome accession   NZ_CP140276
Coordinates   3278207..3279382 (-) Length   391 a.a.
NCBI ID   WP_024719243.1    Uniprot ID   A0A081LEM4
Organism   Bacillus altitudinis strain F7     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3273207..3284382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS16975 (U2873_16975) - 3273383..3273802 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  U2873_RS16980 (U2873_16980) comFC 3273859..3274326 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  U2873_RS16985 (U2873_16985) - 3274378..3274581 (-) 204 Protein_3298 hypothetical protein -
  U2873_RS16990 (U2873_16990) - 3274542..3274835 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  U2873_RS16995 (U2873_16995) comFA 3274900..3276279 (-) 1380 WP_171465919.1 DEAD/DEAH box helicase Machinery gene
  U2873_RS17000 (U2873_17000) - 3276399..3277241 (-) 843 WP_265153765.1 DegV family protein -
  U2873_RS17005 (U2873_17005) degU 3277453..3278142 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  U2873_RS17010 (U2873_17010) degS 3278207..3279382 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  U2873_RS17015 (U2873_17015) - 3279604..3280272 (+) 669 WP_181891304.1 YigZ family protein -
  U2873_RS17020 (U2873_17020) - 3280257..3281348 (+) 1092 WP_025208065.1 LCP family protein -
  U2873_RS17025 (U2873_17025) - 3281427..3282778 (+) 1352 WP_286108591.1 IS3 family transposase -
  U2873_RS17030 (U2873_17030) - 3282826..3283893 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45550.27 Da        Isoelectric Point: 5.8757

>NTDB_id=913453 U2873_RS17010 WP_024719243.1 3278207..3279382(-) (degS) [Bacillus altitudinis strain F7]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTENERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=913453 U2873_RS17010 WP_024719243.1 3278207..3279382(-) (degS) [Bacillus altitudinis strain F7]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTCAAGCAAATTAAACAGCAAG
TCAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGATTATCTGAGGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGCCAGATCACAGTGGTTCTCAACTATCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTTAGAATTATTGAAGCCCAAGAAGAAGAACGTAAAAGGGTATCCCGTGA
AATTCATGACGGTCCGGCACAGATGCTGGCAAACGTGATGATGCGCTCTGAATTAATTGAACGGATTTTCAGAGATCGTG
GGACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAAATCACGTTCCAATGCCTAGGGGATACAGAAAATGAAAGAATTGCTTCTCAATTCGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCATTGAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACAAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTACTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LEM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841