Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   U2873_RS17005 Genome accession   NZ_CP140276
Coordinates   3277453..3278142 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain F7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3272453..3283142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS16965 (U2873_16965) - 3272539..3273021 (-) 483 WP_007499977.1 flagellar protein FlgN -
  U2873_RS16970 (U2873_16970) flgM 3273040..3273303 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  U2873_RS16975 (U2873_16975) - 3273383..3273802 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  U2873_RS16980 (U2873_16980) comFC 3273859..3274326 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  U2873_RS16985 (U2873_16985) - 3274378..3274581 (-) 204 Protein_3298 hypothetical protein -
  U2873_RS16990 (U2873_16990) - 3274542..3274835 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  U2873_RS16995 (U2873_16995) comFA 3274900..3276279 (-) 1380 WP_171465919.1 DEAD/DEAH box helicase Machinery gene
  U2873_RS17000 (U2873_17000) - 3276399..3277241 (-) 843 WP_265153765.1 DegV family protein -
  U2873_RS17005 (U2873_17005) degU 3277453..3278142 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  U2873_RS17010 (U2873_17010) degS 3278207..3279382 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  U2873_RS17015 (U2873_17015) - 3279604..3280272 (+) 669 WP_181891304.1 YigZ family protein -
  U2873_RS17020 (U2873_17020) - 3280257..3281348 (+) 1092 WP_025208065.1 LCP family protein -
  U2873_RS17025 (U2873_17025) - 3281427..3282778 (+) 1352 WP_286108591.1 IS3 family transposase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=913452 U2873_RS17005 WP_008348273.1 3277453..3278142(-) (degU) [Bacillus altitudinis strain F7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=913452 U2873_RS17005 WP_008348273.1 3277453..3278142(-) (degU) [Bacillus altitudinis strain F7]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996