Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   U2873_RS16995 Genome accession   NZ_CP140276
Coordinates   3274900..3276279 (-) Length   459 a.a.
NCBI ID   WP_171465919.1    Uniprot ID   -
Organism   Bacillus altitudinis strain F7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3269900..3281279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS16955 (U2873_16955) flgL 3270083..3270994 (-) 912 WP_171465820.1 flagellar hook-associated protein FlgL -
  U2873_RS16960 (U2873_16960) flgK 3271003..3272523 (-) 1521 WP_099496871.1 flagellar hook-associated protein FlgK -
  U2873_RS16965 (U2873_16965) - 3272539..3273021 (-) 483 WP_007499977.1 flagellar protein FlgN -
  U2873_RS16970 (U2873_16970) flgM 3273040..3273303 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  U2873_RS16975 (U2873_16975) - 3273383..3273802 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  U2873_RS16980 (U2873_16980) comFC 3273859..3274326 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  U2873_RS16985 (U2873_16985) - 3274378..3274581 (-) 204 Protein_3298 hypothetical protein -
  U2873_RS16990 (U2873_16990) - 3274542..3274835 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  U2873_RS16995 (U2873_16995) comFA 3274900..3276279 (-) 1380 WP_171465919.1 DEAD/DEAH box helicase Machinery gene
  U2873_RS17000 (U2873_17000) - 3276399..3277241 (-) 843 WP_265153765.1 DegV family protein -
  U2873_RS17005 (U2873_17005) degU 3277453..3278142 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  U2873_RS17010 (U2873_17010) degS 3278207..3279382 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  U2873_RS17015 (U2873_17015) - 3279604..3280272 (+) 669 WP_181891304.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52523.10 Da        Isoelectric Point: 9.9420

>NTDB_id=913451 U2873_RS16995 WP_171465919.1 3274900..3276279(-) (comFA) [Bacillus altitudinis strain F7]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVSSGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVAHRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLYE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFSESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=913451 U2873_RS16995 WP_171465919.1 3274900..3276279(-) (comFA) [Bacillus altitudinis strain F7]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCATCTTCTTCCTGTTGAATGTCAGTGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTCATCCATAGAACACCTGCTGTCGATAGGGTGTCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACGAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGTATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTCATAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGTATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTTCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
ATACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(316-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508