Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   U2873_RS15255 Genome accession   NZ_CP140276
Coordinates   2933247..2933888 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain F7     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2928247..2938888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS15220 (U2873_15220) - 2929375..2929806 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  U2873_RS15225 (U2873_15225) - 2929806..2930147 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  U2873_RS15230 (U2873_15230) - 2930140..2931618 (+) 1479 WP_322535993.1 Na+/H+ antiporter subunit D -
  U2873_RS15235 (U2873_15235) - 2931625..2932104 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  U2873_RS15240 (U2873_15240) - 2932104..2932385 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  U2873_RS15245 (U2873_15245) mnhG 2932369..2932743 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  U2873_RS15250 (U2873_15250) - 2932834..2933223 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  U2873_RS15255 (U2873_15255) comA 2933247..2933888 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  U2873_RS15260 (U2873_15260) comP 2933969..2936281 (-) 2313 WP_171465713.1 ATP-binding protein Regulator
  U2873_RS15265 (U2873_15265) comX 2936339..2936506 (-) 168 WP_108611760.1 competence pheromone ComX -
  U2873_RS15270 (U2873_15270) - 2936503..2937417 (-) 915 WP_108611759.1 polyprenyl synthetase family protein -
  U2873_RS15275 (U2873_15275) degQ 2937569..2937709 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  U2873_RS15280 (U2873_15280) - 2938215..2938568 (+) 354 WP_017358939.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=913444 U2873_RS15255 WP_007500477.1 2933247..2933888(-) (comA) [Bacillus altitudinis strain F7]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=913444 U2873_RS15255 WP_007500477.1 2933247..2933888(-) (comA) [Bacillus altitudinis strain F7]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718