Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   U2873_RS15275 Genome accession   NZ_CP140276
Coordinates   2937569..2937709 (-) Length   46 a.a.
NCBI ID   WP_003213123.1    Uniprot ID   A0A5K1N966
Organism   Bacillus altitudinis strain F7     
Function   modification of regulators (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2938645..2939996 2937569..2937709 flank 936


Gene organization within MGE regions


Location: 2937569..2939996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2873_RS15275 (U2873_15275) degQ 2937569..2937709 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  U2873_RS15280 (U2873_15280) - 2938215..2938568 (+) 354 WP_017358939.1 hypothetical protein -
  U2873_RS15285 (U2873_15285) - 2938645..2939996 (+) 1352 WP_286108591.1 IS3 family transposase -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5677.42 Da        Isoelectric Point: 4.6828

>NTDB_id=913446 U2873_RS15275 WP_003213123.1 2937569..2937709(-) (degQ) [Bacillus altitudinis strain F7]
MEKYEIEELKQLLWKLENEIRETTASLHNINKSIDQYDKYEYVKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=913446 U2873_RS15275 WP_003213123.1 2937569..2937709(-) (degQ) [Bacillus altitudinis strain F7]
ATGGAAAAGTATGAAATCGAAGAACTTAAACAACTATTATGGAAACTTGAAAACGAAATTAGAGAAACAACGGCTTCTCT
TCATAACATTAACAAAAGCATTGATCAATACGACAAATATGAATATGTGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1N966

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.696