Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   L6432_RS13025 Genome accession   NZ_AP025339
Coordinates   2579557..2580246 (-) Length   229 a.a.
NCBI ID   WP_003185730.1    Uniprot ID   Q5QSL6
Organism   Bacillus paralicheniformis strain J25TS1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2574557..2585246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS12990 - 2574725..2575201 (-) 477 WP_023856391.1 flagellar protein FlgN -
  L6432_RS12995 flgM 2575220..2575486 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  L6432_RS13000 - 2575566..2575985 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  L6432_RS13005 comFC 2576044..2576781 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  L6432_RS13010 - 2576738..2577022 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  L6432_RS13015 comFA 2577077..2578471 (-) 1395 WP_020453117.1 DEAD/DEAH box helicase Machinery gene
  L6432_RS13020 - 2578595..2579437 (-) 843 WP_020453118.1 DegV family protein -
  L6432_RS13025 degU 2579557..2580246 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  L6432_RS13030 degS 2580328..2581485 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator
  L6432_RS13035 - 2581708..2582346 (+) 639 WP_023856394.1 YigZ family protein -
  L6432_RS13040 - 2582361..2583440 (+) 1080 WP_020453121.1 LCP family protein -
  L6432_RS13045 - 2583493..2583876 (-) 384 WP_020453122.1 YunG family protein -
  L6432_RS13050 - 2583985..2585049 (-) 1065 WP_020453123.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25842.50 Da        Isoelectric Point: 5.9436

>NTDB_id=91337 L6432_RS13025 WP_003185730.1 2579557..2580246(-) (degU) [Bacillus paralicheniformis strain J25TS1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=91337 L6432_RS13025 WP_003185730.1 2579557..2580246(-) (degU) [Bacillus paralicheniformis strain J25TS1]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTCAAACGGATTTTGGATTTCGAACC
TACCTTTGAGGTAGTGGCCGAAGGAGACGACGGAGATGAAGCGGCTCGCATTGTCGAGCACTACCATCCTGATGTGGTAA
TCATGGATATTAATATGCCGAATGTAAACGGCGTAGAAGCGACAAAACAACTGGTCGACTTGTATCCGGAATCAAAGGTT
ATTATTTTATCTATCCATGACGATGAAAACTATGTTACACATGCATTAAAAACAGGAGCCCGCGGCTATCTGCTGAAAGA
AATGGATGCCGACACGCTGATCGAAGCCGTGAAAGTTGTGGCTGAAGGCGGATCTTATCTGCATCCTAAGGTTACTCATA
ATCTTGTGAATGAATTCCGCCGTCTTGCAACAAGCGGTGTATCATCTCACGCTCAACATGAAGTGTATCCGGAAATCCGG
AGACCTCTTCACATTCTTACCAGAAGGGAATGCGAGGTTCTGCAGATGCTGGCGGACGGAAAAAGCAACCGCGGAATCGG
CGAATCATTATTTATCAGTGAAAAAACGGTTAAAAACCATGTCAGCAACATCCTTCAAAAAATGAATGTAAACGACAGAA
CGCAGGCTGTCGTTGTAGCCATTAAAAATGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5QSL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

98.69

100

0.987

Multiple sequence alignment