Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   L6432_RS13005 Genome accession   NZ_AP025339
Coordinates   2576044..2576781 (-) Length   245 a.a.
NCBI ID   WP_026580174.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain J25TS1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2571044..2581781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS12970 fliW 2571195..2571626 (-) 432 WP_035337783.1 flagellar assembly protein FliW -
  L6432_RS12975 - 2571648..2572214 (-) 567 WP_020453109.1 DUF6470 family protein -
  L6432_RS12980 flgL 2572264..2573175 (-) 912 WP_020453110.1 flagellar hook-associated protein FlgL -
  L6432_RS12985 flgK 2573186..2574709 (-) 1524 WP_043054491.1 flagellar hook-associated protein FlgK -
  L6432_RS12990 - 2574725..2575201 (-) 477 WP_023856391.1 flagellar protein FlgN -
  L6432_RS12995 flgM 2575220..2575486 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  L6432_RS13000 - 2575566..2575985 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  L6432_RS13005 comFC 2576044..2576781 (-) 738 WP_026580174.1 ComF family protein Machinery gene
  L6432_RS13010 - 2576738..2577022 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  L6432_RS13015 comFA 2577077..2578471 (-) 1395 WP_020453117.1 DEAD/DEAH box helicase Machinery gene
  L6432_RS13020 - 2578595..2579437 (-) 843 WP_020453118.1 DegV family protein -
  L6432_RS13025 degU 2579557..2580246 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  L6432_RS13030 degS 2580328..2581485 (-) 1158 WP_020453119.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28124.81 Da        Isoelectric Point: 9.9151

>NTDB_id=91335 L6432_RS13005 WP_026580174.1 2576044..2576781(-) (comFC) [Bacillus paralicheniformis strain J25TS1]
MTTRFAKAIEKGGNELHCLICEAPLLHSLSWRALFFLRSEEKICRACKDNFIRIEGRTVCPKCGRPQESEELCGDCLKWE
ADPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPLFINAFHQYYRRTPAVLVPIPLSEERKAERGFNQAER
LASLLKKPVMHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAAACLMTSGEAKSVSSF
TLIRS

Nucleotide


Download         Length: 738 bp        

>NTDB_id=91335 L6432_RS13005 WP_026580174.1 2576044..2576781(-) (comFC) [Bacillus paralicheniformis strain J25TS1]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGAAATGAACTGCATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTATTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGACAATTTTATCAGGA
TCGAAGGAAGAACGGTGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAACTTTGCGGTGACTGCCTAAAATGGGAA
GCTGATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGC
CCGTTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTTATTTATCAATGCTTTCCACCAATATTACC
GCCGCACTCCAGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGAGG
CTTGCTTCCTTATTAAAAAAACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAA
AGAACGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCGGTAAAGAATCTGGATATCATATTGATCGACGACT
TGTATACGACAGGGGCGACCCTTCATCATGCCGCTGCTTGTCTGATGACATCCGGTGAGGCAAAATCTGTATCATCATTT
ACATTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.782

97.143

0.522

Multiple sequence alignment