Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SR900_RS00940 Genome accession   NZ_CP140158
Coordinates   199571..199969 (-) Length   132 a.a.
NCBI ID   WP_018623445.1    Uniprot ID   -
Organism   Kangiella aquimarina strain DSMZ 16071     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 194571..204969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR900_RS00920 (SR900_00920) - 195339..196214 (-) 876 WP_026309170.1 protein-glutamate O-methyltransferase CheR -
  SR900_RS00925 (SR900_00925) - 196229..198571 (-) 2343 WP_018623443.1 methyl-accepting chemotaxis protein -
  SR900_RS00930 (SR900_00930) - 198614..199162 (-) 549 WP_018623444.1 chemotaxis protein CheW -
  SR900_RS00935 (SR900_00935) - 199169..199534 (-) 366 WP_012800162.1 response regulator transcription factor -
  SR900_RS00940 (SR900_00940) pilG 199571..199969 (-) 399 WP_018623445.1 twitching motility response regulator PilG Regulator
  SR900_RS00945 (SR900_00945) gshB 200209..201159 (+) 951 WP_018623446.1 glutathione synthase -
  SR900_RS00950 (SR900_00950) - 201210..202133 (+) 924 WP_018623447.1 energy transducer TonB -
  SR900_RS00955 (SR900_00955) - 202181..202741 (+) 561 WP_018623448.1 YqgE/AlgH family protein -
  SR900_RS00960 (SR900_00960) ruvX 202741..203178 (+) 438 WP_018623449.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14635.97 Da        Isoelectric Point: 8.9984

>NTDB_id=913152 SR900_RS00940 WP_018623445.1 199571..199969(-) (pilG) [Kangiella aquimarina strain DSMZ 16071]
MSDLFKGLKVMVVDDSKTIRRTAETLLKKQGCDVVTGVDGYDALSKIADYKPDIIFIDIMMPRLDGYQTCALVKSNQNFK
NTPIIMLSSKDGVFDKAKGRVVGSDNYLTKPFSRDELLNAISQQLQNKPAVA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=913152 SR900_RS00940 WP_018623445.1 199571..199969(-) (pilG) [Kangiella aquimarina strain DSMZ 16071]
ATGAGTGATTTGTTCAAAGGTTTGAAAGTGATGGTGGTGGACGATAGTAAAACTATTCGCCGCACTGCTGAGACACTTTT
GAAAAAACAGGGATGTGATGTTGTAACCGGTGTAGATGGATATGATGCGTTATCCAAAATTGCCGACTATAAGCCAGATA
TCATTTTTATTGATATTATGATGCCTCGCCTTGACGGGTATCAAACCTGTGCTCTTGTTAAAAGTAACCAGAATTTCAAA
AACACCCCAATTATAATGCTGTCCAGTAAAGACGGAGTGTTTGATAAGGCCAAGGGGCGGGTCGTTGGTTCTGACAACTA
TCTGACCAAACCATTTAGCCGTGACGAATTATTAAACGCCATATCCCAGCAGTTGCAAAACAAACCGGCTGTGGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.6

94.697

0.697
  vicR Streptococcus mutans UA159

44.068

89.394

0.394
  pilH Synechocystis sp. PCC 6803

41.525

89.394

0.371