Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   L6432_RS07535 Genome accession   NZ_AP025339
Coordinates   1524691..1524984 (-) Length   97 a.a.
NCBI ID   WP_020452176.1    Uniprot ID   A0A6N2FHJ1
Organism   Bacillus paralicheniformis strain J25TS1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519691..1529984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6432_RS07490 tasA 1520068..1520862 (-) 795 WP_020452167.1 biofilm matrix protein TasA -
  L6432_RS07495 sipW 1520935..1521519 (-) 585 WP_035338370.1 signal peptidase I SipW -
  L6432_RS07500 tapA 1521516..1522244 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  L6432_RS07505 - 1522522..1522842 (+) 321 WP_023855188.1 YqzG/YhdC family protein -
  L6432_RS07510 - 1522872..1523054 (-) 183 WP_020452171.1 YqzE family protein -
  L6432_RS07515 comGG 1523143..1523508 (-) 366 WP_025811163.1 competence type IV pilus minor pilin ComGG -
  L6432_RS07520 comGF 1523520..1524002 (-) 483 WP_230588654.1 competence type IV pilus minor pilin ComGF -
  L6432_RS07525 comGE 1523917..1524264 (-) 348 WP_025811161.1 competence type IV pilus minor pilin ComGE -
  L6432_RS07530 comGD 1524248..1524685 (-) 438 WP_020452175.1 competence type IV pilus minor pilin ComGD -
  L6432_RS07535 comGC 1524691..1524984 (-) 294 WP_020452176.1 competence type IV pilus major pilin ComGC Machinery gene
  L6432_RS07540 comGB 1524998..1526032 (-) 1035 WP_035338372.1 competence type IV pilus assembly protein ComGB Machinery gene
  L6432_RS07545 comGA 1526022..1527086 (-) 1065 WP_025811157.1 competence type IV pilus ATPase ComGA Machinery gene
  L6432_RS07550 - 1527244..1528083 (-) 840 WP_035338373.1 STAS domain-containing protein -
  L6432_RS07560 - 1528325..1528702 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  L6432_RS07565 - 1528913..1529158 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  L6432_RS07570 - 1529194..1529832 (-) 639 WP_020452181.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10670.54 Da        Isoelectric Point: 9.1200

>NTDB_id=91315 L6432_RS07535 WP_020452176.1 1524691..1524984(-) (comGC) [Bacillus paralicheniformis strain J25TS1]
MNEKGFTLIEMLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPSRADLESEGYVKKNLK
CPNGKAIKISNGKAQAD

Nucleotide


Download         Length: 294 bp        

>NTDB_id=91315 L6432_RS07535 WP_020452176.1 1524691..1524984(-) (comGC) [Bacillus paralicheniformis strain J25TS1]
GTGAATGAAAAGGGATTTACACTGATAGAAATGTTAGTCGTCATGCTCGTCATCTCCATCCTGCTGTTGATCACCATACC
GAATGTGACCAAGCATAATCAAAGTATTCAAAAGAAAGGATGCGAAGGGTTAATTAATATGGTTCAAGCGCAAATCACGG
CTTATCAAATGGATCATGACGGGAAAACGCCGAGTAGGGCGGACCTTGAATCTGAAGGTTACGTGAAGAAGAACTTAAAG
TGCCCGAATGGGAAAGCAATTAAAATTTCAAACGGCAAAGCACAGGCTGATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N2FHJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

71.134

100

0.711
  comGC Staphylococcus aureus MW2

45.263

97.938

0.443
  comGC Staphylococcus aureus N315

45.263

97.938

0.443

Multiple sequence alignment