Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABN038_RS14775 Genome accession   NZ_CP159540
Coordinates   3016735..3017364 (-) Length   209 a.a.
NCBI ID   WP_032296620.1    Uniprot ID   -
Organism   Escherichia coli strain PEC1011     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3011735..3022364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN038_RS14760 helD 3011977..3014031 (-) 2055 WP_000420536.1 DNA helicase IV -
  ABN038_RS14765 yccF 3014154..3014600 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABN038_RS14770 yccS 3014610..3016772 (+) 2163 WP_072170306.1 YccS family putative transporter -
  ABN038_RS14775 sxy/tfoX 3016735..3017364 (-) 630 WP_032296620.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABN038_RS14780 sulA 3017583..3018092 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABN038_RS14785 ompA 3018449..3019489 (+) 1041 WP_000750416.1 porin OmpA -
  ABN038_RS14790 matP 3019565..3020017 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABN038_RS14795 ycbZ 3020203..3021963 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24127.97 Da        Isoelectric Point: 8.9891

>NTDB_id=912795 ABN038_RS14775 WP_032296620.1 3016735..3017364(-) (sxy/tfoX) [Escherichia coli strain PEC1011]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVAHRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=912795 ABN038_RS14775 WP_032296620.1 3016735..3017364(-) (sxy/tfoX) [Escherichia coli strain PEC1011]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACA
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995