Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   U0028_RS08130 Genome accession   NZ_CP140007
Coordinates   1763877..1766090 (+) Length   737 a.a.
NCBI ID   WP_114942664.1    Uniprot ID   -
Organism   Pseudomonas putida strain HAMBI_0006     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1758877..1771090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0028_RS08110 (U0028_08110) - 1760746..1761369 (+) 624 WP_049274319.1 glutathione S-transferase -
  U0028_RS08115 (U0028_08115) - 1761504..1762436 (+) 933 WP_016500911.1 ABC transporter ATP-binding protein -
  U0028_RS08120 (U0028_08120) - 1762433..1763212 (+) 780 WP_016500910.1 ABC transporter permease -
  U0028_RS08125 (U0028_08125) - 1763096..1763734 (-) 639 WP_122983527.1 DUF2062 domain-containing protein -
  U0028_RS08130 (U0028_08130) comA 1763877..1766090 (+) 2214 WP_114942664.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U0028_RS08135 (U0028_08135) exbB 1766195..1766830 (+) 636 WP_016500907.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U0028_RS08140 (U0028_08140) - 1766827..1767261 (+) 435 WP_016500906.1 ExbD/TolR family protein -
  U0028_RS08145 (U0028_08145) lpxK 1767261..1768262 (+) 1002 WP_059395220.1 tetraacyldisaccharide 4'-kinase -
  U0028_RS08150 (U0028_08150) - 1768307..1768492 (+) 186 WP_114942665.1 Trm112 family protein -
  U0028_RS08155 (U0028_08155) kdsB 1768489..1769253 (+) 765 WP_059395219.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U0028_RS08160 (U0028_08160) - 1769253..1769717 (+) 465 WP_049276734.1 low molecular weight protein-tyrosine-phosphatase -
  U0028_RS08165 (U0028_08165) murB 1769714..1770733 (+) 1020 WP_049276733.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79511.30 Da        Isoelectric Point: 10.3466

>NTDB_id=912385 U0028_RS08130 WP_114942664.1 1763877..1766090(+) (comA) [Pseudomonas putida strain HAMBI_0006]
MRTGMFALALGLLCLGFLPVLPSVGWLLALAACAAVSLFTRVWPVGCFLLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
RVVGLPARTSQGVRFELEAAHSRRAELPQRLQLSWFGGPPLRAGEHWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDVLRQRLLVVEANGRQAALVALVLGDGTGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGATLPLLLALVAVLLVEPL
AALLPGFWLSFMAVVTLVYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSVAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDGLFRLLALVAQQRPAWVAPALPLWAWLLVSLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPHGQVEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGSLDTMVISHAHADHAGGAS
AMQRGLPVRRLIGGEALEEVPLQPCASGEQWDWDGVRFSLWRWAAGQSSNDRSCVLLVEAQGERLLLAGDMEAAAERAWL
ADHETPRIDWLQSPHHGSRSSSTEAFIRATAPRGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVVGQHG
EAEGMRGQRRFWRVRAE

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=912385 U0028_RS08130 WP_114942664.1 1763877..1766090(+) (comA) [Pseudomonas putida strain HAMBI_0006]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGCTGTGCCTGGGCTTTCTCCCCGTATTGCCATCGGTCGGGTGGCT
GCTAGCGCTGGCGGCCTGTGCTGCCGTCAGCCTGTTTACCCGTGTTTGGCCGGTGGGCTGCTTTCTGTTGGGCCTGTGTT
GGGCGTGCTGGTCTGCTCAGCAGGCGCTTGATGACCGCCTGGCTGCCGGCCTGGATGGCCGCACCTTATGGCTGGAGGGG
CGGGTGGTCGGCTTGCCAGCACGCACCTCGCAAGGCGTGCGCTTCGAGCTGGAGGCAGCACACTCGCGGCGGGCCGAGCT
GCCGCAACGCCTGCAACTGAGCTGGTTCGGCGGGCCGCCGCTGCGGGCCGGTGAGCACTGGCGGCTGGCCGTGACCCTTC
AGCGCCCCGCCGGGCTGCTCAACCCACATGGGCCCGACCGGGAGGCGCAACTGCTGGCCAGGCGGGTGGGTGCAACCGGT
ACGGTAAAGGCCGGGCAACTGCTGGCGCCGGTAACCGGTGGTTGGCGCGATGTGCTGCGTCAGCGTTTGCTGGTGGTCGA
AGCCAATGGCCGGCAGGCCGCGTTGGTGGCACTGGTGCTTGGCGACGGCACAGGCCTGGCCCGGGAGGACTGGCAGACGT
TGCAAGCCACCGGCACGGTGCACCTGTTGGTGATCTCTGGCCAGCACATCGGCCTGGTGGCCGGCTTGCTGTACGGTCTG
GTCGCCGGACTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTGCCGTGGCTGCCCTGGGCGTGTGGCCTGGCCATGGCGGC
GGCGCTGGCCTACGGCTGGCTGGCCGGTGCTGGTGTGCCGGTGCAGCGCGCCTGCCTGATGCTGGCGGTGGTGTTGCTCT
GGCGCCTGCGCTTTCGCCACCTCGGTGCGACGCTGCCGCTGTTGCTGGCGCTGGTCGCGGTGCTGCTGGTCGAACCGCTG
GCAGCGCTGCTGCCTGGGTTCTGGCTGTCATTTATGGCGGTGGTCACGCTTGTCTATTGCTTCAGTGCCCGGCTAGGGGG
TTGGCGGCCTTGGCAGGCCTGGACGCGCGCGCAATGGGTGATCGCCATCGGCCTGCTGCCGGTGTTGCTGGCCACGGGGC
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAATCTTGTCGCAGTGCCTTGGGTGAGCGTGGCGGTGCTGCCTTTGGCACTG
CTGGGTACGTTGCTGTTGCCACTGGGCGGGGTAGGGGAGGCGTTGCTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
TCGGCTGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTGGCGCCGGCCCTGCCATTATGGGCCTGGCTATTGGTGA
GCCTGGGCGCTCTGTTGGTTTTGCTGCCCCGTGGAGTGCCGCTGCGCGGGTTGGGCGGGGTGATGCTGCTGGCCTTGTGG
GTGCCCAGGGAACCGGTGCCGCACGGGCAGGTCGAGGTCTGGCAACTGGACGTTGGCCAAGGGCTGGCGGTGCTGTTGCG
CACCCGGCATCACAGCCTGCTGTACGACGCCGGGCCGGCCAGAGGCGAAAGCGACCTGGGGGAGCGGGTGGTGCTACCGA
CGTTGCGCAAGCTGGGGGTGGGCAGCCTGGACACGATGGTGATCAGCCACGCGCATGCCGACCATGCGGGTGGTGCCTCG
GCCATGCAGCGTGGTCTGCCAGTCAGGCGGCTGATCGGCGGGGAAGCGCTGGAAGAAGTGCCATTGCAGCCTTGTGCCAG
TGGCGAACAATGGGACTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCGGCCGGGCAGAGCAGCAATGACCGTTCCT
GTGTGCTGTTGGTAGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATATGGAAGCTGCTGCCGAACGGGCTTGGCTG
GCAGACCATGAAACGCCCCGTATCGACTGGTTGCAGTCACCGCACCATGGCAGCCGCAGTTCGTCCACCGAGGCGTTCAT
CCGGGCTACTGCGCCGCGTGGGGTATTGATTTCGCGAGGGCGCAACAACAGCTTCGGGCACCCGCATGTTCAGGTGATGG
AGCGTTATCAGCGGCATGGGCTGGCGGTGCATGACACGGCGGTGGAGGGGGCATTGAGGTTGGTGGTGGGGCAGCATGGC
GAAGCCGAAGGTATGAGGGGGCAGCGGCGGTTTTGGCGGGTTCGAGCTGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.778

97.829

0.585
  comA Ralstonia pseudosolanacearum GMI1000

36.189

100

0.384