Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U0028_RS08135 Genome accession   NZ_CP140007
Coordinates   1766195..1766830 (+) Length   211 a.a.
NCBI ID   WP_016500907.1    Uniprot ID   A0AAP1T5P6
Organism   Pseudomonas putida strain HAMBI_0006     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1761195..1771830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0028_RS08115 (U0028_08115) - 1761504..1762436 (+) 933 WP_016500911.1 ABC transporter ATP-binding protein -
  U0028_RS08120 (U0028_08120) - 1762433..1763212 (+) 780 WP_016500910.1 ABC transporter permease -
  U0028_RS08125 (U0028_08125) - 1763096..1763734 (-) 639 WP_122983527.1 DUF2062 domain-containing protein -
  U0028_RS08130 (U0028_08130) comA 1763877..1766090 (+) 2214 WP_114942664.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U0028_RS08135 (U0028_08135) exbB 1766195..1766830 (+) 636 WP_016500907.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U0028_RS08140 (U0028_08140) - 1766827..1767261 (+) 435 WP_016500906.1 ExbD/TolR family protein -
  U0028_RS08145 (U0028_08145) lpxK 1767261..1768262 (+) 1002 WP_059395220.1 tetraacyldisaccharide 4'-kinase -
  U0028_RS08150 (U0028_08150) - 1768307..1768492 (+) 186 WP_114942665.1 Trm112 family protein -
  U0028_RS08155 (U0028_08155) kdsB 1768489..1769253 (+) 765 WP_059395219.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U0028_RS08160 (U0028_08160) - 1769253..1769717 (+) 465 WP_049276734.1 low molecular weight protein-tyrosine-phosphatase -
  U0028_RS08165 (U0028_08165) murB 1769714..1770733 (+) 1020 WP_049276733.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22874.14 Da        Isoelectric Point: 7.3616

>NTDB_id=912386 U0028_RS08135 WP_016500907.1 1766195..1766830(+) (exbB) [Pseudomonas putida strain HAMBI_0006]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMNANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=912386 U0028_RS08135 WP_016500907.1 1766195..1766830(+) (exbB) [Pseudomonas putida strain HAMBI_0006]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCGGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATTCACGAACTGGAGCGCTACAT
CAGCACGCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGAATGCCAATGCGTCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCAATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829