Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   U0040_RS13690 Genome accession   NZ_CP140003
Coordinates   2757403..2757801 (-) Length   132 a.a.
NCBI ID   WP_114836792.1    Uniprot ID   A0A7H8SDP5
Organism   Acinetobacter johnsonii strain HAMBI_0097     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2752403..2762801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0040_RS13660 (U0040_13655) - 2752475..2752744 (-) 270 WP_010325935.1 HPr family phosphocarrier protein -
  U0040_RS13665 (U0040_13660) rapZ 2752741..2753592 (-) 852 WP_004692298.1 RNase adapter RapZ -
  U0040_RS13670 (U0040_13665) panC 2753619..2754461 (-) 843 WP_114836794.1 pantoate--beta-alanine ligase -
  U0040_RS13675 (U0040_13670) panB 2754465..2755274 (-) 810 WP_004692301.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  U0040_RS13680 (U0040_13675) folK 2755311..2755799 (-) 489 WP_004692303.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  U0040_RS13685 (U0040_13680) pcnB 2755796..2757265 (-) 1470 WP_114836793.1 polynucleotide adenylyltransferase PcnB -
  U0040_RS13690 (U0040_13685) comEA 2757403..2757801 (-) 399 WP_114836792.1 ComEA family DNA-binding protein Machinery gene
  U0040_RS13695 (U0040_13690) mazG 2757820..2758581 (-) 762 WP_114836791.1 nucleoside triphosphate pyrophosphohydrolase -
  U0040_RS13700 (U0040_13695) - 2758700..2759467 (+) 768 WP_078388728.1 SDR family oxidoreductase -
  U0040_RS13705 (U0040_13700) - 2759507..2761813 (-) 2307 WP_004979149.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14651.16 Da        Isoelectric Point: 10.8498

>NTDB_id=912357 U0040_RS13690 WP_114836792.1 2757403..2757801(-) (comEA) [Acinetobacter johnsonii strain HAMBI_0097]
MIKIKVSLLIIALLLLSLLAWVPSSYAQSFDQNYLNWKAEQQAWDDRIQAPKSVKRAVSPVQAQPVLSANKISLNQASVD
QLQQLQGVGLKKAQAIVAYRQKQGPFKTIDELQQVRGIGPAIFAKNKTRLGL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=912357 U0040_RS13690 WP_114836792.1 2757403..2757801(-) (comEA) [Acinetobacter johnsonii strain HAMBI_0097]
TTGATAAAAATAAAAGTAAGTTTGTTGATCATTGCGTTGTTATTACTGAGTCTACTGGCTTGGGTACCCAGTAGTTATGC
ACAGTCTTTTGATCAGAACTACCTGAACTGGAAAGCAGAGCAGCAGGCGTGGGATGATCGTATTCAAGCGCCAAAGAGCG
TGAAACGTGCTGTGTCTCCTGTTCAGGCTCAACCTGTGTTGAGCGCAAATAAAATTAGTTTAAATCAAGCCAGTGTCGAT
CAATTACAGCAGCTTCAGGGTGTGGGTTTAAAAAAGGCACAGGCAATTGTGGCCTATCGCCAGAAACAAGGGCCATTTAA
GACCATAGATGAACTACAACAGGTGCGCGGGATTGGACCGGCAATTTTTGCAAAAAATAAAACTCGTTTGGGCTTGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(69-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SDP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

53.279

92.424

0.492
  comEA Acinetobacter baumannii D1279779

50.806

93.939

0.477
  comEA Acinetobacter baylyi ADP1

44.86

81.061

0.364