Detailed information NTG0912073

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: U0036_RS15520
• Genome accession: NZ_CP139967
• Coordinates: 3332717..3333619 (+)
• Length: 300 a.a.
• NCBI ID: WP_063241556.1
• Uniprot ID: -
• Organism: Cupriavidus oxalaticus strain HAMBI_2164
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3327717..3338619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0036_RS15495 (U0036_15500)	-	3327953..3328246 (-)	294	WP_063241560.1	hypothetical protein	-
U0036_RS15500 (U0036_15505)	ispB	3328245..3329174 (+)	930	WP_063241559.1	octaprenyl diphosphate synthase	-
U0036_RS15510 (U0036_15515)	pilF	3329584..3331362 (+)	1779	WP_063241558.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
U0036_RS15515 (U0036_15520)	-	3331442..3332713 (+)	1272	WP_063241557.1	type II secretion system F family protein	-
U0036_RS15520 (U0036_15525)	pilD	3332717..3333619 (+)	903	WP_063241556.1	prepilin peptidase	Machinery gene
U0036_RS15525 (U0036_15530)	coaE	3333671..3334309 (+)	639	WP_063241555.1	dephospho-CoA kinase	-
U0036_RS15530 (U0036_15535)	zapD	3334547..3335305 (+)	759	WP_063241554.1	cell division protein ZapD	-
U0036_RS15535 (U0036_15540)	-	3335310..3335501 (+)	192	WP_029048086.1	DNA gyrase inhibitor YacG	-
U0036_RS15540 (U0036_15545)	-	3335555..3335992 (-)	438	WP_063241553.1	NUDIX domain-containing protein	-
U0036_RS15545 (U0036_15550)	-	3335989..3336906 (-)	918	WP_063241552.1	ATP-binding protein	-
U0036_RS15550 (U0036_15555)	argJ	3336967..3338205 (-)	1239	WP_063241551.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 32046.26 Da
• Isoelectric Point: 8.3382

>NTDB_id=912073 U0036_RS15520 WP_063241556.1 3332717..3333619(+) (pilD) [Cupriavidus oxalaticus strain HAMBI_2164]
MALAYSVSPFPAGSDQLLQALAVLPPAFMVAVTAVLGLVVGSFLNVVIHRLPRMMEREEANYIAELRGDPLPYPARYNLM
VPRSACPHCGHAIAPWENVPVLSWLALRGRCSACKARISARYPLVELACGVLSALVAWRFGPGVQALAALVLVWALLALT
LIDADTQLLPDQITLPLLWLGLVLNLGGLFVPLADAVIGAAAGYLVLWTAYWLFRLVRGKEGMGFGDFKLMAALGAWFGW
QALPALVLLSSVAGVAFGLASIALRRQDRDTPFPFGPFIALAGLVVLVFGSGVLPLTLLP

Nucleotide

• Length: 903 bp

>NTDB_id=912073 U0036_RS15520 WP_063241556.1 3332717..3333619(+) (pilD) [Cupriavidus oxalaticus strain HAMBI_2164]
ATGGCGCTGGCGTATTCCGTTTCGCCGTTTCCCGCAGGCAGCGATCAATTGCTGCAGGCGCTGGCGGTGCTGCCGCCTGC
CTTCATGGTGGCGGTGACGGCCGTGCTCGGCCTGGTGGTGGGCAGTTTCCTCAACGTGGTGATCCACCGGCTGCCGCGCA
TGATGGAGCGCGAGGAAGCCAACTATATCGCCGAGCTGCGCGGCGATCCGCTGCCCTACCCCGCCCGCTACAACCTGATG
GTGCCGCGCTCGGCCTGTCCGCACTGCGGCCACGCGATCGCGCCCTGGGAAAACGTGCCGGTGCTGAGCTGGCTGGCGCT
GCGCGGGCGCTGCTCGGCCTGCAAGGCCCGGATCAGCGCACGCTATCCGCTGGTGGAGCTGGCCTGCGGCGTGCTGAGCG
CGCTGGTGGCGTGGCGCTTCGGCCCTGGCGTGCAGGCCTTGGCGGCACTGGTGCTGGTCTGGGCGCTGCTGGCGCTGACC
CTGATCGATGCCGATACCCAGTTGCTGCCGGACCAGATCACGCTGCCGCTGCTGTGGCTGGGACTGGTGCTGAACCTGGG
CGGGTTGTTCGTGCCGCTGGCCGACGCCGTGATCGGCGCCGCCGCCGGCTACCTGGTGCTGTGGACGGCGTACTGGCTGT
TCCGGCTGGTGCGTGGCAAGGAGGGCATGGGTTTCGGCGACTTCAAGCTGATGGCGGCACTCGGGGCGTGGTTTGGCTGG
CAGGCGCTGCCGGCGCTGGTGCTGCTGTCATCGGTGGCCGGTGTGGCGTTCGGGCTGGCCAGCATCGCACTGCGCCGGCA
GGATCGCGACACGCCCTTCCCTTTCGGCCCCTTTATCGCGCTGGCGGGCCTGGTGGTGCTGGTGTTCGGCTCCGGCGTGC
TGCCGCTGACCTTGCTGCCTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (150-259)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (35-140)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.779	90.667	0.497
pilD	Vibrio campbellii strain DS40M4	51.825	91.333	0.473
pilD	Neisseria gonorrhoeae MS11	48.921	92.667	0.453
pilD	Acinetobacter baumannii D1279779	46.715	91.333	0.427
pilD	Acinetobacter nosocomialis M2	46.35	91.333	0.423