Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   L6419_RS07600 Genome accession   NZ_AP025332
Coordinates   1599604..1600608 (-) Length   334 a.a.
NCBI ID   WP_024532092.1    Uniprot ID   A0A2Z5TP60
Organism   Streptococcus ruminantium strain GUT-184     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1594604..1605608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS07585 (GUT184_14610) thrS 1594669..1596615 (-) 1947 WP_155961914.1 threonine--tRNA ligase -
  L6419_RS07590 (GUT184_14620) - 1597149..1598462 (-) 1314 WP_024532090.1 glycosyltransferase family 4 protein -
  L6419_RS07595 (GUT184_14630) - 1598475..1599509 (-) 1035 WP_120171452.1 glycosyltransferase family 4 protein -
  L6419_RS07600 (GUT184_14640) ccpA 1599604..1600608 (-) 1005 WP_024532092.1 catabolite control protein A Regulator
  L6419_RS07605 (GUT184_14650) - 1600818..1601903 (+) 1086 WP_155961915.1 M24 family metallopeptidase -
  L6419_RS07610 (GUT184_14660) - 1602476..1605007 (-) 2532 WP_165437889.1 MucBP domain-containing protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36845.05 Da        Isoelectric Point: 5.5207

>NTDB_id=91199 L6419_RS07600 WP_024532092.1 1599604..1600608(-) (ccpA) [Streptococcus ruminantium strain GUT-184]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAVASTDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKENGIEFNEGLVFESKYKYEEGYALAERVLNA
GATAAYVAEDEIAAGLLNGISDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VILNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91199 L6419_RS07600 WP_024532092.1 1599604..1600608(-) (ccpA) [Streptococcus ruminantium strain GUT-184]
ATGTTAAACACTGACGATACGGTAACGATTTATGATGTTGCCCGCGAAGCTGGTGTATCCATGGCGACTGTGTCGCGCGT
GGTAAACGGAAATAAGAATGTAAAGGAAAATACCCGTAAAAAGGTATTAGAAGTTATTGACCGTTTGGATTATCGTCCAA
ATGCTGTTGCGCGTGGTTTGGCCAGCAAGAAGACGACCACTGTTGGGGTCGTGATTCCAAATATTGCAAATGCCTATTTT
GCGACTCTGGCTAAAGGTATTGATGATATTGCGGATATGTATAAGTACAATATTGTCCTTGCCAACAGTGATGAGAATGA
CGAAAAAGAAATCAATGTGGTCAATACTTTATTTTCAAAACAGGTGGACGGTATCATTTTCATGGGCTACCACTTGACAG
ACAAGATTCGTGCAGAATTCTCCCGTTCACGAACTCCGATTGTCCTAGCTGGTACCGTGGATTTGGAGCACCAGTTGCCA
AGTGTCAATATTGACTACGCTGTTGCTAGTACGGATGCAGTGAACCTTCTTGCAAAGAATAATAAAAAAATCGCCTTTGT
ATCTGGTCCACTCGTTGATGACATCAATGGAAAAGTTCGTTTTGCTGGTTATAAGCAAGGACTAAAAGAAAATGGGATTG
AGTTCAATGAAGGTTTAGTCTTTGAATCTAAGTATAAGTACGAAGAAGGCTATGCTCTTGCAGAGCGTGTCTTAAATGCC
GGGGCTACCGCTGCCTATGTTGCCGAGGATGAAATTGCAGCAGGTCTATTGAACGGCATCAGTGATATGGGAATCAAAGT
TCCTGAAGATTTTGAAATCATCACCAGTGATGACTCTCTCGTTACTAAATTTACCCGTCCAAACCTGACATCTATCAATC
AACCACTTTATGATATTGGTGCTATTGCTATGCGCATGCTGACAAAAATCATGCACAAGGAAGAGTTGGAAAATCGTGAA
GTGATTTTGAATCACGGTATAAAGGTTCGCAAATCAACGAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)

Bacterial regulatory proteins, lacI family (LacI)

(9-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5TP60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584

Multiple sequence alignment