Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   L6419_RS07550 Genome accession   NZ_AP025332
Coordinates   1587959..1588762 (-) Length   267 a.a.
NCBI ID   WP_024532080.1    Uniprot ID   A0A2Z5TLI9
Organism   Streptococcus ruminantium strain GUT-184     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1582959..1593762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS07530 (GUT184_14500) - 1583288..1583668 (-) 381 WP_237375265.1 OsmC family protein -
  L6419_RS07535 (GUT184_14510) - 1583756..1584802 (-) 1047 WP_237375266.1 D-alanine--D-alanine ligase -
  L6419_RS07540 (GUT184_14520) recR 1585056..1585652 (-) 597 WP_024532078.1 recombination mediator RecR -
  L6419_RS07545 (GUT184_14530) pbp2b 1585661..1587736 (-) 2076 WP_024532079.1 penicillin-binding protein PBP2B -
  L6419_RS07550 (GUT184_14540) vicX 1587959..1588762 (-) 804 WP_024532080.1 MBL fold metallo-hydrolase Regulator
  L6419_RS07555 (GUT184_14550) micB 1588769..1590118 (-) 1350 WP_024532081.1 cell wall metabolism sensor histidine kinase VicK Regulator
  L6419_RS07560 (GUT184_14560) micA 1590111..1590815 (-) 705 WP_120171458.1 response regulator YycF Regulator
  L6419_RS07565 (GUT184_14570) - 1591010..1591771 (+) 762 WP_237375267.1 amino acid ABC transporter ATP-binding protein -
  L6419_RS07570 (GUT184_14580) - 1591781..1592617 (+) 837 WP_237375268.1 transporter substrate-binding domain-containing protein -
  L6419_RS07575 (GUT184_14590) - 1592632..1593330 (+) 699 WP_155961912.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29621.68 Da        Isoelectric Point: 5.7767

>NTDB_id=91196 L6419_RS07550 WP_024532080.1 1587959..1588762(-) (vicX) [Streptococcus ruminantium strain GUT-184]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLSEIDRRPEEIDAIFVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIEANHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQVCDTSPDTATALTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=91196 L6419_RS07550 WP_024532080.1 1587959..1588762(-) (vicX) [Streptococcus ruminantium strain GUT-184]
ATGATCGGAAAAGGTTTTAATTACAGTATTTTAGCTTCGGGCTCCAGTGGTAATTGCTTTTATTTGGAAACCGATAAGAA
GAAAATTTTAGTGGATGCAGGTTTGTCTGGTAAAAAGATCACCAGTCTCCTTTCGGAAATTGACCGCAGACCAGAGGAGA
TTGATGCTATTTTTGTGACGCATGAGCATAGTGACCATATCCATGGTATCGGTGTCTTGGCTCGGAAATATGGCATGGAT
ATATACGCTAACGAGTTAACCTGGCAGGCAATGGAAAGTAAGCTTGGTAAGATTGATGTTGCTCAGAAACATATCTTTGA
GCTAGGGGCGATGAAGACATTTGGAGACTTGGACATTGAATCCTTCGGTGTCAGTCACGATGCAGCCTGCCCACAATTTT
ATCGTTTTATGAAGGACGATAAGTCTTTCGTTATGTTGACAGATACAGGTTATGTCAGTGATCGCATGGTTGGAATTGTG
GAAAATGCAGATGCCTATTTGATTGAGGCGAACCATGATGTTGAAATTTTGCGAGCAGGTTCTTATTCTTGGAATTTGAA
GCAACGTATCCTTTCAGATAAGGGGCACCTCTGTAATGAGGATGGAGCAGATGCTATGATTCGCTCGCTAGGAAATCGGA
CAAAAAAGATTTACCTTGGGCATTTGTCTAAGGAGAATAATATTAAAGAACTTGCTCATATGACGATGGTTAATCAGCTT
GCGCAAGCTGACTTGGGAGTAGGAACTGATTTTCAAGTTTGTGATACGTCTCCGGATACAGCAACCGCTTTAACGAAGAT
TTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5TLI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

73.783

100

0.738

Multiple sequence alignment