NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	U0544_RS05875	Genome accession	NZ_CP139944
Coordinates	1084212..1085699 (-)	Length	495 a.a.
NCBI ID	WP_002121164.1	Uniprot ID	A0A8I1H7H2
Organism	Acinetobacter pittii strain CARB128
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1079212..1090699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0544_RS05845 (U0544_05865)	-	1079242..1079430 (+)	189	WP_002121272.1	hypothetical protein	-
U0544_RS05850 (U0544_05870)	-	1079469..1080281 (+)	813	WP_002121202.1	TorF family putative porin	-
U0544_RS05855 (U0544_05875)	-	1080323..1081201 (-)	879	WP_002121240.1	dihydrodipicolinate synthase family protein	-
U0544_RS05860 (U0544_05880)	-	1081217..1081993 (-)	777	WP_002121159.1	aldolase	-
U0544_RS05865 (U0544_05885)	mocR	1082105..1083538 (+)	1434	WP_002121228.1	PLP-dependent aminotransferase family protein	-
U0544_RS05870 (U0544_05890)	yieF	1083563..1084108 (-)	546	WP_002121179.1	NADPH-dependent FMN reductase	-
U0544_RS05875 (U0544_05895)	comM	1084212..1085699 (-)	1488	WP_002121164.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
U0544_RS05880 (U0544_05900)	-	1085765..1085992 (-)	228	WP_002121136.1	accessory factor UbiK family protein	-
U0544_RS05885 (U0544_05905)	glnK	1086271..1086609 (+)	339	WP_000780326.1	P-II family nitrogen regulator	-
U0544_RS05890 (U0544_05910)	amtB	1086667..1088061 (+)	1395	WP_005079483.1	ammonium transporter	-
U0544_RS05895 (U0544_05915)	nrdR	1088186..1088644 (+)	459	WP_000543541.1	transcriptional regulator NrdR	-
U0544_RS05900 (U0544_05920)	ribD	1088660..1089745 (+)	1086	WP_016802732.1	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	-

Sequence

Protein

Download Length: 495 a.a. Molecular weight: 54466.52 Da Isoelectric Point: 7.3646

                                >NTDB_id=911916 U0544_RS05875 WP_002121164.1 1084212..1085699(-) (comM) [Acinetobacter pittii strain CARB128]

MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR

LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL

KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN

QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE

IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE

DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ

SPHLTEALSYRGNHS

Nucleotide

Download Length: 1488 bp

                                >NTDB_id=911916 U0544_RS05875 WP_002121164.1 1084212..1085699(-) (comM) [Acinetobacter pittii strain CARB128]

ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTGAGTCA

AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA

TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT

CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT

TGGTGAATTAGCTTTAGATGGTCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC

ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA

AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA

TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC

TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCCCTTTCTAAT

CAAGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGACAGCGTCCATTTCGGGCGCC

CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG

GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA

ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG

TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGTTATCAAAACCGTATATCGGGAC

CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA

GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT

TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAGCAACGTTTGA

ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGAGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA

AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	50.806	100	0.509
comM	Glaesserella parasuis strain SC1401	50.1	100	0.505
comM	Legionella pneumophila str. Paris	49.398	100	0.497
comM	Legionella pneumophila strain ERS1305867	49.398	100	0.497
comM	Haemophilus influenzae Rd KW20	48.898	100	0.493
comM	Vibrio campbellii strain DS40M4	47.677	100	0.477
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.123	100	0.469

Detailed information NTG0911916