Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   U0544_RS05955 Genome accession   NZ_CP139944
Coordinates   1099865..1101277 (-) Length   470 a.a.
NCBI ID   WP_002121217.1    Uniprot ID   K9C4E8
Organism   Acinetobacter pittii strain CARB128     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1094865..1106277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS05940 (U0544_05960) lptG 1095917..1096987 (+) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -
  U0544_RS05945 (U0544_05965) gpmI 1097114..1098661 (+) 1548 WP_002121200.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  U0544_RS05950 (U0544_05970) ctpA 1098677..1099861 (+) 1185 WP_002121269.1 S41 family peptidase -
  U0544_RS05955 (U0544_05975) pilR 1099865..1101277 (-) 1413 WP_002121217.1 sigma-54-dependent transcriptional regulator Regulator
  U0544_RS05960 (U0544_05980) pilS 1101301..1102869 (-) 1569 WP_016802656.1 sensor histidine kinase Regulator
  U0544_RS05965 (U0544_05985) gacA 1102880..1103515 (-) 636 WP_002121174.1 response regulator -
  U0544_RS05970 (U0544_05990) pbpG 1103728..1104774 (+) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  U0544_RS05975 (U0544_05995) thrC 1104882..1106021 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52625.61 Da        Isoelectric Point: 6.3452

>NTDB_id=911917 U0544_RS05955 WP_002121217.1 1099865..1101277(-) (pilR) [Acinetobacter pittii strain CARB128]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKQEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGVSSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPPRGTSVSPQIVTKQLN
QTPAVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=911917 U0544_RS05955 WP_002121217.1 1099865..1101277(-) (pilR) [Acinetobacter pittii strain CARB128]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGATGGTAGTGGCTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCACACACACCCATT
GCAGTCTTAACCGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGAGCTTTTGATTTTGTCAGCAAACC
GATTAACCAAATTCACTTAGATCAATTGTTAAAAAAGGCGCTCAACCAGCCAAAACAAGAGCATGAGTTCGGTGAAACAA
CATTAGAAAATGACTTATTAATTGGGCGTTCACCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAATCTGGTACGGGTAAAGAAGTTGTTGCTAATCTAATTCACCGCTTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTCGGGCATAAAA
AAGGCAGTTTTACTGGAGCAACCCAAGACAAACAAGGTCTGATTTTATCGGCACACGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGGGCAGTACAAGAGAAAAAGATTCGCCCTGTAGGTTCAGA
TCAGGAAATTGATGTTGATTTTCGAGTAATCAGTGCGAGCCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGTTGCCGCCACTACGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAGTTTCAAGCAAGCAATTAACGGCGAGCGCTGAAACTTA
CTTATTGCAGCAAGACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAGCGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCGCCTCCTCCTAGAGGCACTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGGCTGTTCAGACTCACCCAAAATTTCCAATGGAAGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACTTTCCGTTCTTTGC
GCTATCGACTCAAAAAGTTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9C4E8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

85.835

100

0.864
  pilR Pseudomonas aeruginosa PAK

50.763

97.66

0.496