Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   U0544_RS02810 Genome accession   NZ_CP139944
Coordinates   433020..433448 (-) Length   142 a.a.
NCBI ID   WP_326938884.1    Uniprot ID   -
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428020..438448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS02795 (U0544_02800) pilX 430659..431468 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U0544_RS02800 (U0544_02805) pilW 431465..432466 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  U0544_RS02805 (U0544_02810) pilV 432466..433026 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  U0544_RS02810 (U0544_02815) fimU 433020..433448 (-) 429 WP_326938884.1 pilus assembly FimT family protein Machinery gene
  U0544_RS02815 (U0544_02820) ispH 433664..434614 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0544_RS02820 (U0544_02825) gmk 434737..435366 (+) 630 WP_002116973.1 guanylate kinase -
  U0544_RS02825 (U0544_02830) rpoZ 435439..435717 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  U0544_RS02830 (U0544_02835) - 435756..435911 (+) 156 Protein_463 hypothetical protein -
  U0544_RS02835 (U0544_02840) spoT 435927..438032 (+) 2106 WP_002116807.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15252.63 Da        Isoelectric Point: 8.5282

>NTDB_id=911905 U0544_RS02810 WP_326938884.1 433020..433448(-) (fimU) [Acinetobacter pittii strain CARB128]
MVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPTSLNWKADSNNSLELK
NIAADGTQSALTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 429 bp        

>NTDB_id=911905 U0544_RS02810 WP_326938884.1 433020..433448(-) (fimU) [Acinetobacter pittii strain CARB128]
ATGGTGACGATTGCGGTCATGGCTATTATCGCGATGATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACT
AGATGGAAACCAACGAGATCTAATCAATACTTTATCGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCA
TTAATCTGAATTCAACAGCTTTAAATACTCCCACTTCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAA
AATATCGCTGCTGATGGTACGCAGAGTGCATTAACAGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATAT
TACCCAAGATACACTTTTATCTATTTGTAATTCAAAAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACAT
TAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(32-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

86.62

100

0.866