Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   U0544_RS02795 Genome accession   NZ_CP139944
Coordinates   430659..431468 (-) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain CARB128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425659..436468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0544_RS02780 (U0544_02785) pilE 425878..426303 (-) 426 WP_002117055.1 type IV pilin protein Machinery gene
  U0544_RS02785 (U0544_02790) pilY2 426300..426782 (-) 483 WP_002116770.1 type IV pilin protein Machinery gene
  U0544_RS02790 (U0544_02795) pilY1 426793..430647 (-) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  U0544_RS02795 (U0544_02800) pilX 430659..431468 (-) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  U0544_RS02800 (U0544_02805) pilW 431465..432466 (-) 1002 WP_002116811.1 PilW family protein Machinery gene
  U0544_RS02805 (U0544_02810) pilV 432466..433026 (-) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  U0544_RS02810 (U0544_02815) fimU 433020..433448 (-) 429 WP_326938884.1 pilus assembly FimT family protein Machinery gene
  U0544_RS02815 (U0544_02820) ispH 433664..434614 (-) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  U0544_RS02820 (U0544_02825) gmk 434737..435366 (+) 630 WP_002116973.1 guanylate kinase -
  U0544_RS02825 (U0544_02830) rpoZ 435439..435717 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  U0544_RS02830 (U0544_02835) - 435756..435911 (+) 156 Protein_463 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=911902 U0544_RS02795 WP_002117088.1 430659..431468(-) (pilX) [Acinetobacter pittii strain CARB128]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=911902 U0544_RS02795 WP_002117088.1 430659..431468(-) (pilX) [Acinetobacter pittii strain CARB128]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914